Pairwise Alignments

Query, 383 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 370 a.a., putrescine transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) from Escherichia coli BW25113

 Score = 94.0 bits (232), Expect = 6e-24
 Identities = 88/327 (26%), Positives = 140/327 (42%), Gaps = 33/327 (10%)

Query: 6   TALLSALTTALLASASLQAAEPLKAVGAGEGQLDIVAWPGYIERGESDKAYDWVTGFEKE 65
           TAL     + L+A A +  A  +  + A +  L I  W  YI       A D V  FEKE
Sbjct: 2   TALNKKWLSGLVAGALM--AVSVGTLAAEQKTLHIYNWSDYI-------APDTVANFEKE 52

Query: 66  TGCKVNVKTAATSDEMVSLMAKG--GYDLVTASGDASLRLIVGKRVQPINTALIPNWKNI 123
           TG KV      +++ +   +  G  G+DLV  S     R +     QP++ + +P WKN+
Sbjct: 53  TGIKVVYDVFDSNEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLDKSKLPEWKNL 112

Query: 124 DPRLKDAPWYVVGQQTYGTPYQWGPNVLMYNTNVFK-----TAPT-SWNVIFDPQNLPDG 177
           DP L            +  PY W    + YN +  K      AP  SW++I  P+NL   
Sbjct: 113 DPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLE-- 170

Query: 178 KPNKGRVQAYDGPIYIADAALYLKSTKPELGIQNPYELTETQYKAVLELLRAQQPLIHRY 237
           K     V   D P  +    L      P     + Y    T      +LL   +P I RY
Sbjct: 171 KLKSCGVSFLDAPEEVFATVLNYLGKDPNSTKADDYTGPAT------DLLLKLRPNI-RY 223

Query: 238 WHDTTVQMSDFKNEGVVASSAWPYQVNGLQNEKQP------IASTIPKEGATGWADTTML 291
           +H ++  ++D  N  +  +  W   V    N  +       ++ +IPKEGA  + D   +
Sbjct: 224 FH-SSQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAM 282

Query: 292 HTEAKHPNCAYKWMDWSLQPKVQGDVA 318
             +AK+ + AY+++++ L+P V   ++
Sbjct: 283 PADAKNKDEAYQFLNYLLRPDVVAHIS 309