Pairwise Alignments

Query, 223 a.a., amino acid ABC transporter permease from Pseudomonas simiae WCS417

Subject, 221 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  125 bits (313), Expect = 8e-34
 Identities = 77/222 (34%), Positives = 119/222 (53%), Gaps = 6/222 (2%)

Query: 1   MDFDFSGIIPAIPGLWNGMVMTLQLMVMGVVGGIALGTVLALMRLSSSKLLSRVAGAYVN 60
           MD DFS ++ +   L  G+ +TL L V+  +G + LGT L L R+  +  L      Y++
Sbjct: 1   MDLDFSPLLDSWQYLLGGLGVTLLLSVLTAIGALVLGTALGLGRVYGAAWLRIPIVFYID 60

Query: 61  YFRSIPLLLVITWFYLAVPFVLRWITGEDTPIGAFTSCVVAFMMFEAAYFCEIVRAGVQS 120
             R+IP+L+++ WFY AVP     +TG       F + ++A  +  AAY  EIVRAG++S
Sbjct: 61  TQRAIPVLVILVWFYFAVPI----LTG--ISFHPFWAALMALTLHIAAYVAEIVRAGIES 114

Query: 121 IPKGQMAAAQAMGMTYGQTMRLIILPQAFRKMTPLLLQQSIILFQDTSLVYTVGLVDFLN 180
           I  GQ+ AA A+GM+  Q +R ++LPQA  +M P       I  +DT++   + + + + 
Sbjct: 115 IRPGQIRAALALGMSRAQIVRKVVLPQALVRMLPAFGSVLSITIKDTAIATVIAVPELMK 174

Query: 181 SARSNGDIIGRSNEFLIFAGVVYFIISFSASLLVKRLQKRFA 222
            A +      R  E      V+YFII F  + L+  L KR A
Sbjct: 175 RAETIAGQSYRPIEVFTVVMVIYFIILFPGTRLIDALYKRVA 216