Pairwise Alignments

Query, 841 a.a., fimbrial assembly protein from Pseudomonas simiae WCS417

Subject, 831 a.a., Type 1 pili subunit FimD from Pseudomonas putida KT2440

 Score =  259 bits (662), Expect = 4e-73
 Identities = 223/784 (28%), Positives = 353/784 (45%), Gaps = 59/784 (7%)

Query: 23  LSQFARSGFILPGTYSMVVQINSQPISEQSVAFYPPDDDPKGSQACVSRALVEELGLKAS 82
           LS       + PG Y + VQ+N +P  +  + F P  D     Q C+   L+ E G++  
Sbjct: 59  LSMLTSDQGLAPGRYRVEVQVNLEPAGQHELDFQPGPDGEL--QPCLPARLLGEWGMRLD 116

Query: 83  GAAGLTWWKGGECLDIQGL-PGMEVAGDLATSTLSINLPQAYLEYSAINWDPPSRWDEGV 141
             A     +   CLD+  + PG ++        L+I++PQ  +  +  N   PSRWD G+
Sbjct: 117 ALANPED-QASACLDLLTVVPGAQIVFTPTELHLAISIPQISMRRNTANQVDPSRWDSGI 175

Query: 142 PGLLVDYNVTAQASHQKNDSVRHNFSGNGTVGANAGAWRLRADWQGRVDRDRDQAARHPT 201
               ++Y  +      ++     +       G N G WRLR+    R      Q ++  T
Sbjct: 176 NAAFINYQASTLNGRNRSSGRYTSNDLYLNSGINLGEWRLRSTQSWR------QGSQGKT 229

Query: 202 LEWSRY--YAYRAIPALKARMVLGEDYLYSELFDSFRFTGAALNSDESQLPPNLRGYAPE 259
            EW+R   YA R IP   A + +GE +   E+F S   +G  + SD   L  N RGYAP 
Sbjct: 230 -EWTRAQTYAQRDIPGTLANLTIGETFTDREVFRSVPISGVRVASDMGMLADNQRGYAPI 288

Query: 260 VVGVAKTNARVIISQQGRVLYETLVAAGPFRIQDLNDAVSGRLDVRVEEQDGSVHTFQID 319
           + GVA++ A+V I Q G  +Y T V+AGP+ I DL+ A SG L+V V E DG V  F   
Sbjct: 289 IRGVAQSRAKVEIWQHGYPIYSTYVSAGPYAIDDLSTAGSGELEVVVTEADGQVRRFIQP 348

Query: 320 TAGVPYLTRPGQVRYKLASGRPSNLQYGGDGDFFGSGEFSWGISNGWSLYGGGITDNNYR 379
            + +  L RPG  RY    GR  N     +      G  + G     ++YGG +    YR
Sbjct: 349 YSTMSNLLRPGVWRYSATVGR-YNPSSDLETPLLWQGTLAVGSYWDTTVYGGLMASEFYR 407

Query: 380 ALSVGAGRDLLAFGAVSLDATQSHASVWN---ETLSGKSYRLQYSKKFEEYDSQVTFAGY 436
           A ++G  +DL   GAV+ D TQ+ +++ N     + G SY L+Y+K F    + + FAGY
Sbjct: 408 AGNLGFSKDLGHLGAVAFDVTQASSAIDNAHEREVQGSSYALKYAKAFTT-QTNLRFAGY 466

Query: 437 RFSEKNYLSMSEYLDARHYGRNGELAGLDKESEYSGSWKPIGGSKALYTATLNKQFRDLG 496
           R+S + Y    E +  R            +++ +SGS       ++   A+++   + LG
Sbjct: 467 RYSTQGYRDFDEVVRQR-----------SQDTTFSGS------RRSRLEASVH---QSLG 506

Query: 497 AT--VYLSYNKQTYWERPATQRWNVSMSRYFNVGSVKNLSVSLNMYRTQEY-----NYKD 549
            T  + L+ ++Q YW   ATQR        FN  + ++  V  N++ +Q       N + 
Sbjct: 507 RTSSLTLTLSQQDYWRSNATQR-----QYQFNF-NTQHRGVGYNLFASQSLTDRYGNDRQ 560

Query: 550 NGMALTVSLPLGRSGTLSLDANRAAGKNSFSTRYSDRLDER---NSYQLSASDNAASGYL 606
            G+++TV L  G     + D    A   S     S     R    S  LS  ++A     
Sbjct: 561 FGLSVTVPLHFGHRANATFDLQHNANGYSQRATLSGSDSARALSYSTSLSRDEHARKTAA 620

Query: 607 SHIGDQAD-IDLAASKQQGD-YTSLSVSARGGGTLTAHGAALHRTNSTGGTRLMVDTAGV 664
             +G QA    ++A   + D Y SLS++A G   L A G    R    G T  +++  GV
Sbjct: 621 LSLGHQAPYASVSAGYTEADNYRSLSLNASGAVLLHADGLEFGR--YLGDTAALIEVPGV 678

Query: 665 PDVPVRGYGAPTRSNAFGKAVISDIGSYQRTAASVDLESLPSNVEATQSVTQLTLTEGAI 724
            +V ++     TR+N+ G A++  +  Y+  +  ++ + L  +VE    + Q+   +GA+
Sbjct: 679 ANVGLQN-ATGTRTNSRGYALLPYLQPYRTNSVVLETDRLDPDVEIDNGIAQVVPRQGAV 737

Query: 725 GYRFLDVISGQKAMAVLRLPDGSSPPFGATVKNVKQQDTGIVNDGGNVYLSGIQPGEEMI 784
                +     + +  L    G   PFGA V        G+V   G V L+     + + 
Sbjct: 738 VKHRFEARRVSRLVLTLHDTQGQPLPFGAQVLAENGTQLGMVGQAGLVMLTNPSQEQPLQ 797

Query: 785 VSWG 788
           VSWG
Sbjct: 798 VSWG 801