Pairwise Alignments

Query, 255 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 527 a.a., inner membrane protein from Escherichia coli BL21

 Score =  224 bits (570), Expect = 4e-63
 Identities = 107/229 (46%), Positives = 161/229 (70%), Gaps = 1/229 (0%)

Query: 1   MEWLTNPEIWIAFFTLTALEIVLGIDNIIMISILVSRMPKHMQARTRIFGLALAMVTRIL 60
           MEW+ +P IW    TL  +E+VLGIDN++ I+IL  ++P   + R R+ GL LAM+ R+L
Sbjct: 1   MEWIADPSIWAGLITLIVIELVLGIDNLVFIAILAEKLPPKQRDRARVTGLLLAMLMRLL 60

Query: 61  LLLSITWVMQLTNDLFVVFGQGISGRDLILFFGGLFLLWKSSQEMYHALEGEDETHDEPK 120
           LL SI+W++ LT  LF       S RDLI+ FGG FLL+K++ E+   LEG+D  +   +
Sbjct: 61  LLASISWLVTLTQPLFSFRSFTFSARDLIMLFGGFFLLFKATMELNERLEGKDSNNPTQR 120

Query: 121 GAGGKFIYTIIQIAIIDIVFSLDSVITAVGMVSHVPVMVAAIVVAVLVMMLAAGTISEFI 180
             G KF   + QI ++D +FSLDSVITAVGMV H+ VM+AA+V+A+ +M++A+  +++F+
Sbjct: 121 -KGAKFWGVVTQIVVLDAIFSLDSVITAVGMVDHLLVMMAAVVIAISLMLMASKPLTQFV 179

Query: 181 DKHPSLKMLALSFLLVVGTVLIAESFDVHVPKGYVYFAMAFSLAVEAVN 229
           + HP++ +L LSFLL++G  L+AE F   +PKGY+Y A+ FS+ +EA+N
Sbjct: 180 NSHPTIVILCLSFLLMIGFSLVAEGFGFVIPKGYLYAAIGFSVMIEALN 228