Pairwise Alignments

Query, 192 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

 Score = 73.6 bits (179), Expect = 2e-18
 Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 7/157 (4%)

Query: 25  LQVFLSQRSQMEALVSRRVGCRATAADLVQDLFLRFWRRPLV--QVEELSTYLLRCAGNI 82
           LQ F+  RS +  + +R  GCR+ A D+VQD F R    P +    +   +YL +   N+
Sbjct: 15  LQAFVDNRSILVKIAARITGCRSRAEDVVQDAFFRLSTAPQITSSFKAQLSYLFQIVRNL 74

Query: 83  AIDHLRSEGARARSSEGWLPEQQDN---QGSEPQAALEAGNDLRHVEAALRSLPERTRQI 139
           AIDH R +    + S     E+  N   Q + P+A       L  +  AL  LP RTR  
Sbjct: 75  AIDHYRKQAMELKYSGS--EEEGMNVVVQNASPEATHINRAALNDIAEALNELPPRTRYA 132

Query: 140 FLLNRIHGRKYAQIAKAMGLSQSAVEKHMMRALEACK 176
           F + R++G     IAK +G+S + V   +  AL  C+
Sbjct: 133 FEMYRLNGVPQKDIAKELGVSPTLVNFMIRDALVHCR 169