Pairwise Alignments

Query, 192 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 170 a.a., RNA polymerase subunit sigma-24 from Pseudomonas putida KT2440

 Score = 87.4 bits (215), Expect = 1e-22
 Identities = 53/163 (32%), Positives = 91/163 (55%), Gaps = 11/163 (6%)

Query: 21  RAHFLQVFLSQRSQMEALVSRRVGCRATAADLVQDLFLRFWR----RPLVQVEELSTYLL 76
           ++ F  VFL QR  +   + R VG  +TA DL+Q+ +LR  R    RP   +E +  ++ 
Sbjct: 3   QSRFNSVFLVQRLTLLRTLQRMVGNPSTAEDLLQETYLRVSRALGERP---IEHIEPFVF 59

Query: 77  RCAGNIAIDHLRSEGARARSSEGWLPEQQDNQGSEPQAALE----AGNDLRHVEAALRSL 132
           + A N+A+DHLR+   +AR     +P++  +  + P  + E    A   L+H+  +L  L
Sbjct: 60  QTARNLALDHLRARRVQARMLVDDVPDEVLHSVAAPATSSEDAAHAEQLLKHLSVSLNQL 119

Query: 133 PERTRQIFLLNRIHGRKYAQIAKAMGLSQSAVEKHMMRALEAC 175
            ER ++IF+L+R+HG  Y +IA+ + +S S V+K +   +  C
Sbjct: 120 SERQQRIFILSRLHGATYLEIAEQLSVSPSTVQKELKLIMAIC 162