Pairwise Alignments

Query, 192 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 177 a.a., RNA polymerase sigma factor from Pseudomonas sp. SVBP6

 Score = 81.6 bits (200), Expect = 7e-21
 Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 1/168 (0%)

Query: 26  QVFLSQRSQMEALVSRRVGCRATAADLVQDLFLRFWRRPL-VQVEELSTYLLRCAGNIAI 84
           ++F   +  +EA V+RR G    AADL Q+ FLR  R P   +++ L  +L   A N+  
Sbjct: 10  RLFAEHKKALEAFVARRTGNAQVAADLTQESFLRLARLPADKKIDNLPAFLFTIASNLVR 69

Query: 85  DHLRSEGARARSSEGWLPEQQDNQGSEPQAALEAGNDLRHVEAALRSLPERTRQIFLLNR 144
           DH R    R R   G   E+   +       L A  +   +  A+++LPE TR IFLL  
Sbjct: 70  DHQRQSIRRERLDGGEPSEELACETPGADEQLSALQEQALMHEAIQALPEATRHIFLLYH 129

Query: 145 IHGRKYAQIAKAMGLSQSAVEKHMMRALEACKASLREPSSPRTPGKAP 192
           +    Y +I + + +S  +VE  + RAL  C+A ++      TP   P
Sbjct: 130 VDECSYREIGERLQVSPRSVEYQLRRALIDCRAFIKARLLSGTPRSCP 177