Pairwise Alignments

Query, 192 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 171 a.a., putative RNA polymerase sigma factor FecI from Pseudomonas sp. RS175

 Score = 75.5 bits (184), Expect = 5e-19
 Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 6/159 (3%)

Query: 20  GRAHFLQVFLSQRSQMEALVSRRVGCRATAADLVQDLFLRFWR-RPLVQVEELSTYLLRC 78
           G A    ++ S  S + + +SRR+GCR +AADL QD F+R  + R L  + E   YL   
Sbjct: 8   GNADLALLYSSHHSWLHSWLSRRIGCRESAADLAQDTFVRLLKSRQLSPLREPRAYLSSI 67

Query: 79  AGNIAID-HLRSEGARA-RSSEGWLPEQQDNQGSEPQAALEAGNDLRHVEAALRSLPERT 136
           A  + ID + R E  RA   S   LP QQ     E    L++   L  ++  L  L  R 
Sbjct: 68  ARGLMIDRYRRRELERAYLESLALLPSQQIPSEEERLLILDS---LERIDRLLDLLKPRV 124

Query: 137 RQIFLLNRIHGRKYAQIAKAMGLSQSAVEKHMMRALEAC 175
           R+ FLL ++ G    QIA  + +S+S VE+ + +AL+ C
Sbjct: 125 REAFLLAQLDGLTCQQIADKLCVSRSTVERDLAKALQHC 163