Pairwise Alignments

Query, 192 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 173 a.a., RNA polymerase sigma factor from Pseudomonas fluorescens SBW25

 Score = 94.7 bits (234), Expect = 8e-25
 Identities = 60/159 (37%), Positives = 87/159 (54%), Gaps = 6/159 (3%)

Query: 27  VFLSQRSQMEALVSRRVGCRATAADLVQDLFLRFWRRPLVQ-VEELSTYLLRCAGNIAID 85
           +FL     +   ++R+V     AADLVQ+ FLR   +P  + ++    YL R A N+ ID
Sbjct: 9   LFLKHADTLRGYLARKVRDPQLAADLVQESFLRLAEKPAGERIDNSQGYLYRTASNLLID 68

Query: 86  HLRSEGARARSS---EGWLPEQQDNQGSEPQAALEAGNDLRHVEAALRSLPERTRQIFLL 142
           H+R E  R   S   E     + D  G E QA   A    + ++ AL  LPERT+QIF L
Sbjct: 69  HIRQEARRKTDSVPHEALAEIEDDVAGLEAQAM--AQQQRQALKQALAELPERTQQIFRL 126

Query: 143 NRIHGRKYAQIAKAMGLSQSAVEKHMMRALEACKASLRE 181
           NRI G  +AQ+A+ + +S S+V+KH+ +AL      L+E
Sbjct: 127 NRIEGMTHAQVARHLDISDSSVQKHLAKALAYVMQRLQE 165