Pairwise Alignments

Query, 192 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 185 a.a., FIG006045: Sigma factor, ECF subfamily from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 76.3 bits (186), Expect = 3e-19
 Identities = 52/143 (36%), Positives = 71/143 (49%), Gaps = 3/143 (2%)

Query: 49  AADLVQDLFLRFWRRPLV--QVEELSTYLLRCAGNIAIDHLRSEGARARSSEGWLPEQQD 106
           A DLVQ  F R   R      VE     L   A N+ ID  R    R   S+  L E   
Sbjct: 39  AQDLVQLTFERMLARMRSGEPVENARALLFEIARNLLIDRHRHLKVRQHDSDDLLQEMAG 98

Query: 107 NQGSEPQAALEAGNDLRHVEAALRSLPERTRQIFLLNRIHGRKYAQIAKAMGLSQSAVEK 166
               EP+A        R + A +  LP R R  F+L++I G  +A++A AMG+S +AVE+
Sbjct: 99  PSAHEPEAIYAGMQRARTLVATIERLPPRCRMAFVLHKIEGLSHAEVAAAMGVSVNAVER 158

Query: 167 HMMRALEACKASLREP-SSPRTP 188
           H+M A+ AC+ +L E   + RTP
Sbjct: 159 HIMLAVAACRQALGETVRAKRTP 181