Pairwise Alignments

Query, 192 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 177 a.a., putative RNA polymerase sigma factor FecI from Azospirillum sp. SherDot2

 Score = 78.2 bits (191), Expect = 8e-20
 Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 9/160 (5%)

Query: 27  VFLSQRSQMEALVSRRVGCRATAADLVQDLFLRFW-RRPLVQVEELSTYLLRCAGNIAID 85
           VF + R  +  +  R  GCR  A D+VQD FL+         +   + Y++    N+AID
Sbjct: 15  VFTTHRRSLIGVAERITGCRHHAEDVVQDAFLKLLGAESTSSIRAKAGYMMMVVRNLAID 74

Query: 86  HLRSEGARARSSEGWLPEQQDNQGSEPQAALEAGND-----LRHVEAALRSLPERTRQIF 140
           H R +G  +R     + E++    S P+AA     +     L+ +E+AL  LPERTR  F
Sbjct: 75  HYRRKGMESRLL---VAEEEGQAVSTPEAASPESINVNRQLLQTLESALADLPERTRYAF 131

Query: 141 LLNRIHGRKYAQIAKAMGLSQSAVEKHMMRALEACKASLR 180
            ++RIHG     IA  +G+S + V   +  AL  C+ +++
Sbjct: 132 EMHRIHGHSQKDIAATLGVSPTLVNFMIRDALIHCRKTMK 171