Pairwise Alignments

Query, 162 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 168 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score =  147 bits (371), Expect = 8e-41
 Identities = 73/161 (45%), Positives = 108/161 (67%), Gaps = 3/161 (1%)

Query: 1   MSPPN---TVEVLYNDHHHWLTGWLRRKLGCPESAADLAQDTFMRVLTAREAPTLIEPRA 57
           MSP +    V+ +Y  HH WL GWL+ KL     AAD+A DTF+R+L  R A  ++EPR 
Sbjct: 1   MSPSSHTAAVQNIYEQHHSWLHGWLKGKLHNACDAADVAHDTFVRILGGRHAAQILEPRD 60

Query: 58  FLTTVAKRVLFNFYRRQDLERAYLDALAQMPEHVAPSEEERAIILQTLVELDQLLDGLPV 117
           +L T+A+ ++ + YRR  +E+AY   LA+ P+  A SEE++AII++TLV +D+ L GL  
Sbjct: 61  YLATIARGLVIDRYRRHAIEQAYKQTLAERPDATAISEEDKAIIIETLVAVDKALAGLGE 120

Query: 118 QVKRAFLLAQCDGLTYAQIGAELGISIATVKRHLSKAAMRC 158
           + +R F+L+Q +GLTY QI  EL +S+ TVK+H+ +A   C
Sbjct: 121 RARRIFMLSQVEGLTYQQIADELQVSLTTVKKHMIRALTEC 161