Pairwise Alignments

Query, 162 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 169 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

 Score =  162 bits (410), Expect = 3e-45
 Identities = 83/153 (54%), Positives = 109/153 (71%), Gaps = 1/153 (0%)

Query: 7   VEVLYNDHHHWLTGWLRRKLGCPESAADLAQDTFMRVLTAREA-PTLIEPRAFLTTVAKR 65
           +   Y +HH WL+ WLRR+LGC  SAADLAQDTF+RVL   +  PTL EPRA+L+T+AK 
Sbjct: 12  MHTFYTEHHGWLSAWLRRRLGCSHSAADLAQDTFVRVLLRPQVLPTLREPRAYLSTLAKG 71

Query: 66  VLFNFYRRQDLERAYLDALAQMPEHVAPSEEERAIILQTLVELDQLLDGLPVQVKRAFLL 125
           V+   +RRQ LERAYL+ LA +PE +A S EER  +LQTL E+D +LDG+  + + AF+L
Sbjct: 72  VVSEHWRRQALERAYLETLALLPEPLALSPEERLSLLQTLDEIDAMLDGMSPKAREAFVL 131

Query: 126 AQCDGLTYAQIGAELGISIATVKRHLSKAAMRC 158
           +Q +GLTYA I   L IS  TVKR++ +   RC
Sbjct: 132 SQLEGLTYAAIAERLQISERTVKRYMQQGFERC 164