Pairwise Alignments

Query, 162 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 170 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score =  238 bits (606), Expect = 5e-68
 Identities = 118/158 (74%), Positives = 136/158 (86%)

Query: 5   NTVEVLYNDHHHWLTGWLRRKLGCPESAADLAQDTFMRVLTAREAPTLIEPRAFLTTVAK 64
           +TVE LY+ HH+WLTGWLRR+LGCP SAADLAQDT+MR+L AREAP L+EPRAFL TVAK
Sbjct: 13  STVEGLYHAHHNWLTGWLRRRLGCPHSAADLAQDTYMRLLQAREAPQLVEPRAFLATVAK 72

Query: 65  RVLFNFYRRQDLERAYLDALAQMPEHVAPSEEERAIILQTLVELDQLLDGLPVQVKRAFL 124
           RVL N +RRQ+LERAYL ALAQ+PE VAP EE++AII +TL+ LD LLDGLP  VKRAFL
Sbjct: 73  RVLCNHFRRQELERAYLQALAQVPEEVAPCEEQKAIIFETLLALDHLLDGLPPLVKRAFL 132

Query: 125 LAQCDGLTYAQIGAELGISIATVKRHLSKAAMRCYFAL 162
           LAQ DGL   +I  ELGIS+ATVKR+L+KAAMRCYFAL
Sbjct: 133 LAQVDGLGQGEIARELGISLATVKRYLNKAAMRCYFAL 170