Pairwise Alignments

Query, 162 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

Subject, 170 a.a., RNA polymerase, sigma 19 factor from Pseudomonas putida KT2440

 Score =  159 bits (401), Expect = 3e-44
 Identities = 79/160 (49%), Positives = 113/160 (70%), Gaps = 1/160 (0%)

Query: 3   PPNTVEVLYNDHHHWLTGWLRRKLGCPESAADLAQDTFMRVL-TAREAPTLIEPRAFLTT 61
           P   +  LY +H  WL  WLRR++G    AADL+QDTF+R+L +A+    + EPRA+L T
Sbjct: 8   PEPGLPALYREHRGWLEAWLRRRMGNAWDAADLSQDTFLRILASAQPLADIREPRAYLLT 67

Query: 62  VAKRVLFNFYRRQDLERAYLDALAQMPEHVAPSEEERAIILQTLVELDQLLDGLPVQVKR 121
           V KR+L NF++R+ LE+AYLDALAQ+PE   PS E+R ++L+TL  LD+LLDGL   +++
Sbjct: 68  VGKRLLSNFHQRRSLEQAYLDALAQLPEQHVPSPEQRWVLLETLQALDELLDGLKPAIRK 127

Query: 122 AFLLAQCDGLTYAQIGAELGISIATVKRHLSKAAMRCYFA 161
           AFL +Q +GL YA+IG  LG+   +VKR++++A   C  A
Sbjct: 128 AFLWSQLEGLGYAEIGQRLGVCQRSVKRYMAQAYEHCLLA 167