Pairwise Alignments

Query, 313 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 331 a.a., amino acid ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  155 bits (393), Expect = 1e-42
 Identities = 107/318 (33%), Positives = 162/318 (50%), Gaps = 13/318 (4%)

Query: 4   STQVAEQAVHWLVEMQHGALNPRQQAAWQQWLNAHSEHQRAWDHMQRVNQRLRGMPSPLA 63
           S +V + A+ W + +  G  +  ++  + +WL +  EH RAW  +  ++QR      P A
Sbjct: 10  SARVLDAAIAWQLSLDSGDGSAIEREEFDKWLASDEEHARAWRQLGMLDQRFSVASGP-A 68

Query: 64  HAALNAPTSTSRRQALKL-------LLILGAGSAAAWSLRQQHILPPLTADYRSPVGQRR 116
            AAL       R++  KL        L++G    A       H      AD R+  G++R
Sbjct: 69  RAALLQSREGIRQRVRKLGSGLASVALVIGLALFAGERYVPIHYW---LADQRTATGEQR 125

Query: 117 KVQLADGSQLQLNTGSAVDVHFDGRQRLIRLLEGEILL-TGHAAGTPLQVLTGQGLLTSQ 175
            ++L+DG+ + LNT SA+DV FD ++RL+ L EGEIL+ TGH    P  V T  G L + 
Sbjct: 126 TLKLSDGTLINLNTHSAIDVRFDEKRRLVVLQEGEILVETGHNDERPFYVQTRDGSLRAL 185

Query: 176 AARMNVRQFNDHTQLAVLDGRVEVMPTTYSGLPLAVDATRQVNFTRKGWDTPRPTDANSG 235
             R  V++ +D T+L+VL   V   P       +  +  +QV     G          + 
Sbjct: 186 GTRFIVKREDDATRLSVLQSAVAAQPEALHQEQVFKEG-QQVLMRSDGLGPLLAVTPATD 244

Query: 236 AWADGMLVAAHMRLEDFLGELGRYRRGQVNCDPQVANLLISGSYPLDDSERILDLLEVSL 295
           AW  GMLV  + RL + + EL RYR G +  D  VA+L I+GS+PL D+   L+ L  +L
Sbjct: 245 AWTRGMLVVDNARLGEVVEELSRYRTGYLGVDKNVADLRITGSFPLHDTTLALNALLPTL 304

Query: 296 PVKVRRFTRYWVTVQARA 313
           PV + + T +WVTV+A A
Sbjct: 305 PVHIEQHTPWWVTVKATA 322