Pairwise Alignments

Query, 778 a.a., ferric citrate outer membrane transporter (fecA) (from data) from Pseudomonas simiae WCS417

Subject, 833 a.a., ligand-gated channel from Pseudomonas simiae WCS417

 Score =  129 bits (325), Expect = 5e-34
 Identities = 199/875 (22%), Positives = 325/875 (37%), Gaps = 165/875 (18%)

Query: 8   LARTLRQLLLGASLSLTALP--PVMAADAKP-------YHIAPTSLEAALNQFGREAGVL 58
           LAR L  L L  +++  A+P   V +  A+        + I    L  ALN    +AG++
Sbjct: 4   LARPLHPLALSVAMAFAAVPLLTVQSTHAEESSSAVGRFSIPAGDLSQALNSLAEQAGLV 63

Query: 59  ISFGSEVTAGMQSRGLSGNYGAADGLQKLLEGTGLQA--------RAEG--DN------- 101
           ++F + +T G +S+GLSG Y     L +LL G+GLQA        R E   DN       
Sbjct: 64  LAFDASLTRGKRSQGLSGQYDTDVALTQLLSGSGLQALKLSADRYRLESIPDNGGAMELQ 123

Query: 102 ------AYSLQPATAPASIELGTSSVVGDWLGDAAQTHVFEHPGARDVIRREEFERQGAT 155
                 AY  +  T P S  + T S+     G    T + E P +  ++ +++   Q A 
Sbjct: 124 ATTISGAYQAESPTGPVSGYVATRSL----SGTKTDTALIETPQSISIVTKDQMRAQNAE 179

Query: 156 QAKDVLNRIPGVNAPDNNGTGSHDMALNFGIRGLNPRLASRSTVLMDGIPVPFAPYGQPQ 215
               +L     V       T S    L   IRG +P         +DG+ +P +    PQ
Sbjct: 180 SLNQILRYSAAVIPETRGATASRLDQLT--IRGFSP------ATYLDGLRMPSSRDALPQ 231

Query: 216 LSFAPISMGNMDAVDVVRGGGAVRYGPQNVGGVVNFVTRAIPDAPTVKGGLQTETSPSSS 275
                    +++ V+V+RG  +V YG     GV+N V++   D P  + G++  T     
Sbjct: 232 K-----DAFDLERVEVLRGPASVLYGQGTPSGVINMVSKRPLDTPFHEVGVEYGTFNK-- 284

Query: 276 HDGFKTTGNLLAGGTADNGL------------GGAILYSGTRGGDWRENSNTRIDD---L 320
               K T   L+G   D G+             G + ++ TR          R DD   L
Sbjct: 285 ----KRTTFDLSGPMDDQGVYSYRVAGLFDDADGQVEHTETRRQSLSSAFTWRPDDATSL 340

Query: 321 ILKGKYQLDDANSFNAMAQYYEGQADMPGGLNVADYKADPYQSTRPYDKFWGRRTMFNVG 380
            L G +Q D   +       +      P G ++     D Y   + ++K    R  +++G
Sbjct: 341 TLLGHFQKDPKGASYGSVPAWGSVLHSPTGRSI---DVDFYDGEKNFEK--SDREYYSIG 395

Query: 381 YRYEQD--------------RREFTVNSFFTKTLRSGYLDQGTFLSLSPREYWVRGIETR 426
           + +E                R E    S ++  L + Y         S  +     ++ +
Sbjct: 396 WAFEHHFDDVWTVRQNARYLRSEGQYRSLYSNYLMADYRTIRRSTIASDVDLDAYTLDNQ 455

Query: 427 FAQGFDLGPTSHEVGVGYRYIN------------EAGHELRYRTPIAANQQIPTTNSRND 474
               FD GP  H + +G  Y N             AG  L    P+     +P      D
Sbjct: 456 VQAKFDTGPLQHTLLMGLDYQNTSTDTLSGSGVYTAGPTLDIFNPV-YGAAVPVPAYTTD 514

Query: 475 RDTRGGTEANAFFVDDRIDIGKWTITPGIRYEIIESQQTNNLTNVKYKG-------DYNT 527
             +R  +E    ++ +++   KW +  G RY   +   T+N T     G       D   
Sbjct: 515 GTSR--SEQTGVYLQEQMKWDKWVLLLGGRY---DWASTDNSTQTLSSGAKSKSSLDSKA 569

Query: 528 ALPALNVLYHLTDNWNLYANTEGSFGSVQYSQMPNRVTSGEVKPEKARTWELGTRYDDGT 587
               + ++Y   +    YA+   SF      Q          KP + + +E+G +Y    
Sbjct: 570 FTGRIGLVYLFDNGLAPYASYAESFN----PQSGTGYGGSVFKPTEGKQYEIGIKYQPPG 625

Query: 588 LRAEIGAFLINFDNQYESNQTND----SVIARGETRHQ-GIETSINYALDGLSPALAGFD 642
             + I A +  FD +  +  T D     +   G  + Q G   S  + L+G +      D
Sbjct: 626 SNSFITAAI--FDLRQTNVLTTDPDPTHLCGTGRCQSQDGEVQSRGFELEGKASLNDNLD 683

Query: 643 VYATYAYVDATIREDGPNKGNRVPFSS------------------KHKGTLGVGYT--EG 682
           + A YAY+D  I +   N     P S                   +H  +    YT  +G
Sbjct: 684 ITAAYAYLDNRISKSN-NTVRYAPISDIGVGPAIAAEGTTTYGVPRHTASAWADYTVHDG 742

Query: 683 RWK---LNLDSSYQSSQFADNANTEKETANGANGRIPGYMLFSSRAAYDFGPQLS----D 735
           + K   +   + Y  S + D ANT K         +PGY LF +   YD  P ++    +
Sbjct: 743 KLKGFGVGAGARYVGSSWGDTANTLK---------VPGYTLFDAAVHYDI-PNIARLKDN 792

Query: 736 LNVAVGVKNIFNTQYFTRSFDDNNKGKYVGEPRTV 770
           L +A+   N+ N +Y    +  +    + G  RTV
Sbjct: 793 LRLALNATNLANKEYVASCY--SYSWCWYGSQRTV 825