Pairwise Alignments

Query, 424 a.a., (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (flavodoxin) (EC 1.17.7.3) from Variovorax sp. SCN45

Subject, 416 a.a., 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase from Agrobacterium fabrum C58

 Score =  537 bits (1383), Expect = e-157
 Identities = 275/409 (67%), Positives = 324/409 (79%), Gaps = 3/409 (0%)

Query: 13  PKARRSRQASVVWGPRVVTVGGDAPVRVQSMTNTDTVDAIGTAIQVKELALAGSEMVRIT 72
           PK RR+  A  V G   V VGG APV VQSMTNTDT D   T  QV  L  AGSEMVRIT
Sbjct: 9   PKPRRASVAVDVGG---VIVGGGAPVVVQSMTNTDTADIDATVRQVAALFQAGSEMVRIT 65

Query: 73  VNTPEAAAQVPYIREQLDRMGVDVPLIGDFHYNGHRLLTDYPACAEALSKYRINPGNVGK 132
           V+  E+AA VP IRE+L R+G+DVPLIGDFHY GH+LL D+PACAEAL+KYRINPGNVG 
Sbjct: 66  VDRDESAAAVPKIRERLLRLGMDVPLIGDFHYIGHKLLADHPACAEALAKYRINPGNVGF 125

Query: 133 GDKKDKQFGQMIDAAMRWNKPVRIGVNWGSLDQELLASLMDTNSQRAQPWDAKQVMYEAL 192
            DKKDKQFG++++ A+R++KPVRIGVNWGSLDQELL +LMD N ++  P  A+QV  EA+
Sbjct: 126 KDKKDKQFGEIVEMAIRYDKPVRIGVNWGSLDQELLTTLMDRNKEQGFPLSARQVTREAI 185

Query: 193 ITSAIESAKLAESMGMAGNQVILSCKVSGVQDLISVYRELARRCEYPLHLGLTEAGMGTK 252
           + SA+ SA+LAE +G+  N++ILS KVS VQDLI+VY  L+ R  + LHLGLTEAGMG+K
Sbjct: 186 VQSALISAELAEEIGLPRNRIILSAKVSQVQDLIAVYSMLSERSNHALHLGLTEAGMGSK 245

Query: 253 GTVASATALSILLQEGIGDTIRVSLTPQPGESRTQEVLIANEILQALGLRVFVPSVTACP 312
           G VAS+ A+  +LQ GIGDTIRVSLTP+P   RT+EV +A E+LQ +G R F+P V ACP
Sbjct: 246 GIVASSAAMGYVLQHGIGDTIRVSLTPEPNGDRTREVQVAQELLQVMGFRQFIPVVAACP 305

Query: 313 GCGRTTSTTFQELAKQIDDYLRMQMPVWRKKYPGVETLKVAVMGCIVNGPGESKHADIGI 372
           GCGRTTST FQELA+ I + +R  MP+WR+KYPGVE L VAVMGCIVNGPGESKHADIGI
Sbjct: 306 GCGRTTSTVFQELAQNIQNDIRKNMPIWREKYPGVEALNVAVMGCIVNGPGESKHADIGI 365

Query: 373 SLPGTGEAPAAPVFIDGEKALTLRGDNIANEFHQLVETYIEKRFGGEHA 421
           SLPGTGE+PAAPVFIDGEKALTLRG NIA +F  LV  YIEKRFG + A
Sbjct: 366 SLPGTGESPAAPVFIDGEKALTLRGPNIAADFEALVIDYIEKRFGQKDA 414