Pairwise Alignments

Query, 186 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

Subject, 180 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 53.1 bits (126), Expect = 3e-12
 Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 4/162 (2%)

Query: 8   TLRARMVARYVELRSKLERIVGSRDDAADAMQETWLRLSTTSSSTSDGGTVNNADAYLLR 67
           TL A     +  L   L + +G    AAD   + ++R+   +        +    A+L  
Sbjct: 16  TLTAMYSEHHGWLHGWLRKKLGCSQHAADLAHDAFIRVLMLAEPQQ----IKEPRAFLAT 71

Query: 68  MAANIATDQYRQNNVLLVHGEIDELMHIVDEVSDPERIASARSDVQALSQVLGRMPRRRR 127
            A  +  D  R+  +   + E   +      + DP  I  A   ++ ++++L  +P + R
Sbjct: 72  TAGRLLIDGARRRRIEKAYMEALVIQCEDAGMPDPAAIHVALQALERIAEMLAGLPAKAR 131

Query: 128 EILVAARVEGQLNDEIARRFDVSLSTVEKELRAALEFCKQHL 169
           E  + +R++G    EIA R DVS STV+  + +AL  C   L
Sbjct: 132 EAFLLSRLDGLTYSEIATRLDVSASTVKNYISSALVHCYHSL 173