Pairwise Alignments

Query, 186 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

Subject, 169 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 61.2 bits (147), Expect = 9e-15
 Identities = 42/149 (28%), Positives = 76/149 (51%), Gaps = 7/149 (4%)

Query: 20  LRSKLERIVGSRDDAADAMQETWLRLSTTSSSTSDGGTVNNADAYLLRMAANIATDQYRQ 79
           L+  L R +G R+ AAD  Q+T+LRL  +     D      + +YL ++A N+  DQ+R+
Sbjct: 22  LQGWLRRRLGDREHAADVAQDTFLRLLVSGRFPGD----KESRSYLAQIARNLVIDQWRR 77

Query: 80  NNVLLVHGEIDELMHIVDEVSDP-ERIASARSDVQALSQVLGRMPRRRREILVAARVEGQ 138
             +   +  ++ + H+ +  S   E  A     +  +  +L RMP   R+  + ++ EG 
Sbjct: 78  LRIERAY--LESIAHLPEPESPSLETRALILETLMQIDAMLDRMPDNVRQAFLLSQFEGL 135

Query: 139 LNDEIARRFDVSLSTVEKELRAALEFCKQ 167
              +IA R  V++S+V+K +  A+  C Q
Sbjct: 136 SYAQIAERLGVTVSSVQKYMTRAIVACYQ 164