Pairwise Alignments

Query, 186 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

Subject, 191 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 71.6 bits (174), Expect = 8e-18
 Identities = 57/179 (31%), Positives = 81/179 (45%), Gaps = 15/179 (8%)

Query: 6   SSTLRARMVARYVELRSKLE----RIVGSRDDAADAMQETWLRLSTTSSSTSDGGTVNNA 61
           S+  RAR V  +   R+++E    R VG R  A+D +QE +LR             V   
Sbjct: 14  SAGARARFVQVFQAQRARMEALVSRRVGCRATASDLVQELFLRFWRRPEVK-----VEAL 68

Query: 62  DAYLLRMAANIATDQYRQNNVLLVHGEIDELMHIVDEVS---DPERIASARSDVQALSQV 118
           D YLLR A N+A D  R  +       + E    V E S    PE+      D+Q +   
Sbjct: 69  DTYLLRCAGNLAIDHLRSESS---RERVAEAAVPVSEASLAQAPEQAVEVDHDLQRIEAT 125

Query: 119 LGRMPRRRREILVAARVEGQLNDEIARRFDVSLSTVEKELRAALEFCKQHLPDVEAAQR 177
           L  +P R R+I +  R+ G    EIA+   +S S VEK +  ALE CK  + +  +  R
Sbjct: 126 LRALPERTRQIFLLNRIHGCKYSEIAKAMQLSQSAVEKHMMRALEACKASVAEPASTPR 184