Pairwise Alignments

Query, 186 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

Subject, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

 Score = 63.5 bits (153), Expect = 2e-15
 Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 13  MVARYVELRSKL----ERIVGSRDDAADAMQETWLRLSTTSSSTSDGGTVNNADAYLLRM 68
           ++  +V+ RS L     RI G R  A D +Q+ + RLST    TS   +     +YL ++
Sbjct: 14  LLQAFVDNRSILVKIAARITGCRSRAEDVVQDAFFRLSTAPQITS---SFKAQLSYLFQI 70

Query: 69  AANIATDQYRQNNVLLVH-GEIDELMHIVDEVSDPERIASARSDVQALSQVLGRMPRRRR 127
             N+A D YR+  + L + G  +E M++V + + PE     R+ +  +++ L  +P R R
Sbjct: 71  VRNLAIDHYRKQAMELKYSGSEEEGMNVVVQNASPEATHINRAALNDIAEALNELPPRTR 130

Query: 128 EILVAARVEGQLNDEIARRFDVSLSTVEKELRAALEFCKQ 167
                 R+ G    +IA+   VS + V   +R AL  C++
Sbjct: 131 YAFEMYRLNGVPQKDIAKELGVSPTLVNFMIRDALVHCRK 170