Pairwise Alignments

Query, 186 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score = 73.6 bits (179), Expect = 4e-18
 Identities = 53/170 (31%), Positives = 77/170 (45%), Gaps = 4/170 (2%)

Query: 7   STLRARMVARYVELRSKLERIVGSRDDAADAMQETWLRLSTTSSSTSDGGTVNNADAYLL 66
           S L A     Y +L   L R +  R  AAD  QET+L+L            V +A +++ 
Sbjct: 7   SGLLASFQEHYDDLLQFLTRRMSDRQRAADVAQETYLKLVNIDEQAVP---VLHARSFIF 63

Query: 67  RMAANIATDQYR-QNNVLLVHGEIDELMHIVDEVSDPERIASARSDVQALSQVLGRMPRR 125
           R+A N+A D  R +  +   H + D    +      PE    AR  +Q L Q L ++P  
Sbjct: 64  RVAGNLAIDALRREQRIAASHDDSDGACEVACPAPAPEAALLARERLQILDQALLQLPDN 123

Query: 126 RREILVAARVEGQLNDEIARRFDVSLSTVEKELRAALEFCKQHLPDVEAA 175
            R+ L+  RVEG    ++A+R  VS S V K +  AL  C+  L     A
Sbjct: 124 ARQALLLNRVEGLTQKQVAQRLGVSESMVAKYIGQALRHCRGRLKQAGVA 173