Pairwise Alignments

Query, 186 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

Subject, 178 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 51.2 bits (121), Expect = 1e-11
 Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 18/153 (11%)

Query: 20  LRSKLERIVGSRDDAADAMQETWLRLSTTSSSTSDGGTVNNADAYLLRMAANIATDQYRQ 79
           +R  L+R +G+  DAA+  Q+ ++RL +     +D     +A AYL RM+ N   D +R+
Sbjct: 25  IRQWLQRKLGNAHDAAELAQDVFVRLLSKPRVFNDH---EHARAYLGRMSRNACVDFWRR 81

Query: 80  NNVLLVHGEIDELMHIVDEVSDPERIASARSD-------VQALSQVLGRMPRRRREILVA 132
             V   + E+          + PE++A +          ++ L  +  RMP+R  E    
Sbjct: 82  RRVEQAYLEV--------LAAQPEQLAPSLEHQAVILETLEQLQAMFERMPQRVAEAFSM 133

Query: 133 ARVEGQLNDEIARRFDVSLSTVEKELRAALEFC 165
           A+++G    EIA +  VS  +V   L  A+  C
Sbjct: 134 AQLQGMKQREIAEQLGVSERSVNSYLAQAMYQC 166