Pairwise Alignments

Query, 186 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

Subject, 191 a.a., RNA polymerase sigma-70 factor, Bacteroides expansion family 1 from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 49.3 bits (116), Expect = 4e-11
 Identities = 40/172 (23%), Positives = 76/172 (44%), Gaps = 6/172 (3%)

Query: 1   MNEGMSSTLRARMVARYVELRSKLERIVGSRDDAADAMQETWLRLSTTSSSTSDGGTVNN 60
           +  G S    A     + +L     + VG+ + A D +Q+ + +     +S        +
Sbjct: 12  LRHGDSEAFNAVYALYWKKLYFHAYKRVGTAELAEDMVQDVFFQFWLKRASLV---ITKS 68

Query: 61  ADAYLLRMAANIATDQYRQNNVLLVHGEIDELM-HIVDEVSDPERIASARSDVQALSQVL 119
            ++YL+ M  N     +R+        + DEL+ H+    SD ER       +  + +++
Sbjct: 69  IESYLMGMLKNKILMHFREKYA--ASEKYDELVRHLSVHDSDTERRIDYGDLLSHVDELI 126

Query: 120 GRMPRRRREILVAARVEGQLNDEIARRFDVSLSTVEKELRAALEFCKQHLPD 171
            R+P + + +   +R E   N EIA R  +S+ TVE  +  +L + + H PD
Sbjct: 127 ERLPEQSKHVFRLSRKEFLSNMEIADRLQISVKTVEYHIHYSLTYLRDHCPD 178