Pairwise Alignments

Query, 186 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

Subject, 166 a.a., sigma factor from Agrobacterium fabrum C58

 Score = 52.8 bits (125), Expect = 3e-12
 Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 6/150 (4%)

Query: 14  VARYVELRSKLERIVGSRDDAADAMQETWLRLSTTSSSTSDGGTVNNADAYLLRMAANIA 73
           VA  V+L      I+GSR DA D +QE +L+     S     G   N  +YL R+  N+A
Sbjct: 14  VAHRVDLIKYATLILGSRADAEDVVQEAFLKFVPEGS-----GNPTNLKSYLFRIVRNLA 68

Query: 74  TDQYRQNNVLLVHGEID-ELMHIVDEVSDPERIASARSDVQALSQVLGRMPRRRREILVA 132
            D  R++   L     D     +  +   PE  A    +V+ +  +L  +P + R  L  
Sbjct: 69  LDNRRRSRQDLRERPDDTPFWGMPQDNGTPEEHALFCDEVRQMQTILAGLPVQARVALEM 128

Query: 133 ARVEGQLNDEIARRFDVSLSTVEKELRAAL 162
            R  G   +EIAR   VS++   + ++ ++
Sbjct: 129 HRFGGYNMEEIARHLGVSVAGAHRLIKGSI 158