Pairwise Alignments

Query, 332 a.a., Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system from Variovorax sp. SCN45

Subject, 314 a.a., putative Transmembrane sensor from Pseudomonas putida KT2440

 Score =  100 bits (249), Expect = 5e-26
 Identities = 88/304 (28%), Positives = 133/304 (43%), Gaps = 32/304 (10%)

Query: 15  RQAEAWWVRLHSGRATRADADAFREWVTHSTAHAQAWREVMRTWSALDPLLAEEAARQAS 74
           R A  W   L SG A+ +D     +W   S  H  AW++                AR A 
Sbjct: 13  RAAARWLALLDSGDASESDLQRLAQWRASSHLHEDAWQKASLL-----------RARFAG 61

Query: 75  RAGTLSLRGLSAALGLHSPGRRAFLG---GAVAASVTAGVMALDPPLGLWPSVGDLTADY 131
             G L++    AAL     GRRA L    G  A    A +++ + PL  W      TAD 
Sbjct: 62  LPGALAM----AALDRPDAGRRALLKQALGVTALLPVAWLVSRELPLDAW------TADM 111

Query: 132 RTATGEQRQVALARGISVRMNTQTLIN-RIGADASPRGLVLVAGEAEIAANGASDFLVET 190
           RTA GE+RQ  L+ G  +++NT + ++  +GA      + L+ GE  ++        ++ 
Sbjct: 112 RTAVGERRQALLSDGTLLQLNTDSAVDIELGAGR----VALLRGEVAVSVPANLSLTLQV 167

Query: 191 GGGRLVARSARFNIRHTGPQVCVTCLDGRLTVS-VNGEQRALEAGRQVTFDRAGLQEVVR 249
             GR+V       +R       V+ + G +++  + G    L+ G+Q +   AG+  V +
Sbjct: 168 PYGRVVLSEGEACLRLLDEACRVSAIKGAVSLQPLRGPAVMLQDGQQASLQAAGVGPV-K 226

Query: 250 ADEASVSTWRTGVLSFDRMPLAEVIDEINRYRPGKVFLRNEELGRTPVRMQLNLRSIDNA 309
           A +A    WR G L  D  PL E++ E+ RYRPG V     EL R  V     L   D  
Sbjct: 227 AFDAWQLGWREGALRLDDRPLGELLHELRRYRPG-VLRWAPELERLRVTGTFRLDDTDRV 285

Query: 310 LVMI 313
           L ++
Sbjct: 286 LALL 289