Pairwise Alignments

Query, 332 a.a., Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system from Variovorax sp. SCN45

Subject, 335 a.a., putative Transmembrane sensor from Pseudomonas putida KT2440

 Score = 81.6 bits (200), Expect = 2e-20
 Identities = 76/298 (25%), Positives = 133/298 (44%), Gaps = 23/298 (7%)

Query: 17  AEAWWVRLHSGRATRADADAFREWVTHSTAHAQAWREVMRTWSALDPLLAEEAARQASRA 76
           A  W +RLH+   T+A+ +AF +W+     HA+ ++ ++  W   D L          R+
Sbjct: 18  AAHWCMRLHAEDCTQAEREAFADWLAADPRHAEEYQAMLEIWQTADLL---------PRS 68

Query: 77  GTLSLRGLSAALGLHSPGRRAFLGGAVAASVTAGVMALDPPLGLWPSVGDLTADYR--TA 134
            T+      A    H+   R +   A AA++   V+ L   +G W   G L   Y+   A
Sbjct: 69  ATVIDFNPPAR---HAARPRNWRPLASAAAIALAVLPLAGWMG-WEQ-GWLPNHYQHFEA 123

Query: 135 TGEQRQVALARGISVRMNTQTLINRIGADASPRGLVLVAGEA--EIAANGASDFLVETGG 192
               + V L+ G +V++N  T +  +      R + L  GEA  ++  + +  F+V  G 
Sbjct: 124 GDRMQTVELSDGSTVQLNLHTELTFLNY-KDQRQVTLKRGEAFFKVRHDSSHPFIVRAGS 182

Query: 193 GRLVARSARFNIRHTGPQVCVTCLDGRLTVSVNGEQRA--LEAGRQVTFDRAGLQ-EVVR 249
           G+      +FN+     QV VT ++G + VS  G      L  G Q ++ +   + ++ +
Sbjct: 183 GQTRVTGTQFNVWKYQDQVKVTLVEGSVLVSSEGSAGGYRLGPGMQASYHKGDFEPQLEQ 242

Query: 250 ADEASVS-TWRTGVLSFDRMPLAEVIDEINRYRPGKVFLRNEELGRTPVRMQLNLRSI 306
           +D+   S  WR+G L  D + L + +  INRY    + L +   GR  +    N R +
Sbjct: 243 SDDYGNSLAWRSGKLVLDNLSLEQALPVINRYLDAPLLLADASTGRIRISGIYNTREV 300