Pairwise Alignments

Query, 332 a.a., Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system from Variovorax sp. SCN45

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score = 86.7 bits (213), Expect = 9e-22
 Identities = 75/273 (27%), Positives = 122/273 (44%), Gaps = 35/273 (12%)

Query: 70  ARQA---SRAGTLSLRGLSAALGLHSPGRRAFLGGAVA--------ASVTAGVMALDPPL 118
           ARQA   +R   L+ + ++  LG+       ++G A+         A V A V+ L   +
Sbjct: 124 ARQALLLNRVEGLTQKQVAQRLGVSESMVAKYIGQALRHCRGRLKQAGVAASVVLLVAAV 183

Query: 119 GLWPSVGDLTADYRTATGEQRQVALARGISVRMNTQTLINRIGADASPRGLVLVAGEAEI 178
             W     L ADY TA GE++ + L  G  V +N+ + ++ +      R +VL AGEA  
Sbjct: 184 AGWQQAPILLADYHTAVGERQVITLTDGTRVTLNSASALS-VAFSEHERRVVLDAGEALF 242

Query: 179 -AANGASDFLVETGGGRLVARSARFNIRHTGPQVCVTCLDGRLTVSVNGEQRALEAGRQV 237
             A+ +  F+VET G R+   +A F+++  G             V   GE +  E     
Sbjct: 243 ETADDSRPFVVETAGARVQGNAATFSVQRDGH-----------VVLARGEAKVGEH---- 287

Query: 238 TFDRAGLQEVVRADEASVSTWRTGVLSFDRMPLAEVIDEINRYRPGKVFLRNEELGRTPV 297
                  +  V AD  +   W+ G L F+  PL +V+ E+ RYR G++ L + +L    V
Sbjct: 288 -------ELAVAADAGTQMAWQRGKLIFNGKPLGQVLTELERYRHGRIVLSDSKLAAMEV 340

Query: 298 RMQLNLRSIDNALVMIRELYGARMRSLPGGIVV 330
               +L   +  L  + + YG ++  LP   VV
Sbjct: 341 SGVFDLDEPEALLRTLEQRYGLKVTYLPWLAVV 373