Pairwise Alignments

Query, 332 a.a., Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system from Variovorax sp. SCN45

Subject, 328 a.a., putative Transmembrane sensor from Pseudomonas putida KT2440

 Score =  102 bits (253), Expect = 2e-26
 Identities = 84/306 (27%), Positives = 133/306 (43%), Gaps = 28/306 (9%)

Query: 1   MSAMSFSDSESLLQRQAEAWWVRLHSGRATRADADAFREWVTHSTAHAQAWREVMRTWSA 60
           MS MS    +   Q++A AW+  L           AF  W      +A A+ E+   W  
Sbjct: 19  MSPMSAKQLQPDPQQEALAWFSLLRQPGCDETQRQAFAAWC-QVQENAHAYAELETFWQQ 77

Query: 61  LDPLLAEEAARQASRAGTLSLRGLSAALGLHSPGRRAFLGGAVAASVTAGVMALDPPLGL 120
           L P  A    R                   H   RR+ LG  +A +   G+ A       
Sbjct: 78  LQPAPARPRPR-------------------HVTVRRSHLGKGLALAFLLGLAAA--AYLY 116

Query: 121 WPSVGDLTADYRTATGEQRQVALARGISVRMNTQTLINRIGADASPRGLVLVAGEA--EI 178
           WP +  L ++  T  GE+R + LA G ++ +++ + +N +      R L LV G+   E+
Sbjct: 117 WPLMQRLASELHTDVGERRSIRLADGTTLNLDSASAMN-VDLRGRTRQLHLVQGQVHLEV 175

Query: 179 AANGASDFLVETGGGRLVARSARFNI-RHTGPQVCVTCLDGRLTVSVNGEQRALEAGRQV 237
             +G +   VE G  R+     R  I RH G    V    G+  V+  GEQR + AG +V
Sbjct: 176 VLDGRA-MDVEVGNARIQVYGTRLQIARHAGRDELVV-FSGKAMVTQGGEQRMVSAGERV 233

Query: 238 TFDRAGLQEVVRADEASVSTWRTGVLSFDRMPLAEVIDEINRYRPGKVFLRNEELGRTPV 297
           TFD   +  V +AD  +  +WR G L    MPL +V++ +  Y+  ++++ +E++    V
Sbjct: 234 TFDDTRIDPVRKADLKTADSWRNGRLKATDMPLRQVLERLAGYQGQRLWMMDEQVAHRRV 293

Query: 298 RMQLNL 303
               NL
Sbjct: 294 SGDFNL 299