Pairwise Alignments

Query, 332 a.a., Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system from Variovorax sp. SCN45

Subject, 321 a.a., putative Transmembrane sensor from Pseudomonas putida KT2440

 Score = 87.4 bits (215), Expect = 4e-22
 Identities = 96/328 (29%), Positives = 134/328 (40%), Gaps = 21/328 (6%)

Query: 4   MSFSDSESLLQRQAEAWWVRLHSGRATRADADAFREWVTHSTAHAQAWREVMRTWSALDP 63
           MS +  +  + + A  W+ RLH+     A    +  W+   T H  AW  V         
Sbjct: 1   MSRAPLDHAVLQAAAGWFARLHAAHNDAAIQAQWHAWLNEDTRHRLAWSYVENINQRFGG 60

Query: 64  LLAE-EAARQASRAGTLSLRGLSAALGLHSPGRRAFLGGAVAASVTAGVMALDPPLGLW- 121
           L  + E ARQ            S     HS  RRA LG    A V AGV+        W 
Sbjct: 61  LSGQAEQARQVFD---------SVRRDRHS--RRAVLGSLCVAGV-AGVLGWGGWQRGWV 108

Query: 122 PSVGDLTADYRTATGEQRQVALARGISVRMNTQTLINRIGADASPRGLVLVAGEAEI-AA 180
            S     A YRT  GE R V LA G  + +N  T ++ +  D   R L L  GE  I + 
Sbjct: 109 DSPRAWFATYRTGLGEVRPVTLADGSQLWLNGGTALD-VQFDEGSRQLRLYRGEILIESG 167

Query: 181 NGASDFLVETGGGRLVARSARFNIRHTGPQVCVTCLDG--RLTVSVNGEQRALEAGRQVT 238
                  V T  GR+     RF++R  G Q  ++   G  + T S +G Q  L+AG+ + 
Sbjct: 168 KDPRPLSVVTRAGRVQPLGTRFSVRDQGLQTTLSVFAGAVQATCSGSGRQTTLQAGQMMV 227

Query: 239 FDRAGLQEVVRADEASVSTWRTGVLSFDRMPLAEVIDEINRYRPGKVFLRNEELGRTPVR 298
           FD   +     A       W  GVL  + MPL ++ID +  YR G + + +  +G     
Sbjct: 228 FDAQQVGAPSTAQRLR-EDWSRGVLVAEDMPLVQMIDILRDYRHGHLGI-DPAIGSLRAV 285

Query: 299 MQLNLRSIDNALVMIRELYGAR-MRSLP 325
               L   D AL M+      R +R+LP
Sbjct: 286 GTFPLLDTDRALAMLERALPIRVVRTLP 313