Pairwise Alignments

Query, 220 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 172 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

 Score = 51.2 bits (121), Expect = 1e-11
 Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 3/145 (2%)

Query: 77  LHRRLERQLGCADLASECLHDAWLRLGERQPRETPANPDAYIYRVACNLAMDGMRERK-- 134
           L R L+R +     A + L + +LR+          + + ++Y+ A NLA+D +R R+  
Sbjct: 17  LLRTLQRMVNNHSTAEDLLQETYLRVTRALSERPIDHLEPFVYQTARNLALDHLRARRIQ 76

Query: 135 -RWMGLNEDCEDVDVIADLQPGPDMIAEARSEVAAVDRAMQGLPGRHRAVLVALRWHEMS 193
            R +  N   + +  +A     P+   +A   + A+  ++  L  R + + +  R H  S
Sbjct: 77  ARTLQENVPLDVLQSVAAPISTPEDATQAEQMLEALSVSLGQLSARQQRIFILSRLHGCS 136

Query: 194 RQEVARRHGVSLRKVDTALRQALGV 218
            QE+A + GVSL  V   L+  + +
Sbjct: 137 YQEIADQLGVSLSTVQKELKLIMAI 161