Pairwise Alignments

Query, 220 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 180 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 55.5 bits (132), Expect = 6e-13
 Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 9/155 (5%)

Query: 66  LQAHLAANYQALHRRLERQLGCADLASECLHDAWLRLGERQPRETPANPDAYIYRVACNL 125
           L A  + ++  LH  L ++LGC+  A++  HDA++R+      +    P A++   A  L
Sbjct: 17  LTAMYSEHHGWLHGWLRKKLGCSQHAADLAHDAFIRVLMLAEPQQIKEPRAFLATTAGRL 76

Query: 126 AMDGMRER---KRWM-GLNEDCEDVDVIADLQPGPDMIAEARSEVAAVDRAMQGLPGRHR 181
            +DG R R   K +M  L   CED  +     P P  I  A   +  +   + GLP + R
Sbjct: 77  LIDGARRRRIEKAYMEALVIQCEDAGM-----PDPAAIHVALQALERIAEMLAGLPAKAR 131

Query: 182 AVLVALRWHEMSRQEVARRHGVSLRKVDTALRQAL 216
              +  R   ++  E+A R  VS   V   +  AL
Sbjct: 132 EAFLLSRLDGLTYSEIATRLDVSASTVKNYISSAL 166