Pairwise Alignments

Query, 220 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 178 a.a., RNA polymerase sigma factor RpoE from Variovorax sp. SCN45

 Score =  105 bits (263), Expect = 4e-28
 Identities = 61/150 (40%), Positives = 87/150 (58%)

Query: 66  LQAHLAANYQALHRRLERQLGCADLASECLHDAWLRLGERQPRETPANPDAYIYRVACNL 125
           L+  L + Y  L +RL R+LG +D AS+ L D WLRL  R   +   +P +Y+ RVA NL
Sbjct: 9   LRNFLVSRYDELKQRLARRLGNSDQASDALQDTWLRLESRDDIDGVRDPASYLLRVAVNL 68

Query: 126 AMDGMRERKRWMGLNEDCEDVDVIADLQPGPDMIAEARSEVAAVDRAMQGLPGRHRAVLV 185
           A D + ++ R     E    ++   D  PGP  IAE RSE+AA+   +  +P R R VLV
Sbjct: 69  AYDQLGKQGRLATPEEIDALLEDAPDPAPGPSQIAEDRSEMAALAALIARMPPRRRQVLV 128

Query: 186 ALRWHEMSRQEVARRHGVSLRKVDTALRQA 215
            +RW  + ++EVA R G+SLR V+  L+ A
Sbjct: 129 MVRWEHLPQREVAARLGISLRTVEKELKDA 158