Pairwise Alignments

Query, 220 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 178 a.a., no description from Variovorax sp. SCN45

 Score =  161 bits (408), Expect = 6e-45
 Identities = 85/151 (56%), Positives = 104/151 (68%)

Query: 66  LQAHLAANYQALHRRLERQLGCADLASECLHDAWLRLGERQPRETPANPDAYIYRVACNL 125
           L A + ++Y  L RRL R LGC DLAS+ LHDAWLRL +        NPDAY+YR ACN 
Sbjct: 9   LSAFVTSHYVQLVRRLTRHLGCPDLASDALHDAWLRLADIDSFHLVGNPDAYVYRAACNA 68

Query: 126 AMDGMRERKRWMGLNEDCEDVDVIADLQPGPDMIAEARSEVAAVDRAMQGLPGRHRAVLV 185
           A+D +R  +     +E   ++  +AD  PGP  IAEARS+V AVDRAM+ LP RHR++LV
Sbjct: 69  ALDRLRSARLRQHAHEADAELARVADHAPGPHHIAEARSDVMAVDRAMRHLPHRHRSILV 128

Query: 186 ALRWHEMSRQEVARRHGVSLRKVDTALRQAL 216
            LR HEMSRQEVA R G+SLR+VDT L QAL
Sbjct: 129 GLRVHEMSRQEVAIRQGLSLRRVDTVLDQAL 159