Pairwise Alignments

Query, 220 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 161 a.a., ECF subfamily RNA polymerase sigma-24 factor from Pseudomonas putida KT2440

 Score = 58.2 bits (139), Expect = 9e-14
 Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 3/148 (2%)

Query: 73  NYQALHRRLERQLGCADLASECLHDAWLRLGERQPRETPANPDAYIYRVACNLAMDGMRE 132
           +Y  L     R+L     A +  HDA++R+ E  PRE    P AY+++ A N+A+DG R 
Sbjct: 10  HYHELIGTWTRKLRSRQQAEDLTHDAFVRVLET-PREQVEQPRAYLHQAARNIAVDGFRR 68

Query: 133 RKRWMGLNEDCEDVDVIADLQPGPDMIAEARSEVAAVDRAMQGLPGRHRAVLVALRWHEM 192
             R   L    E  +  A     P+    A     +V+RA+  LP   R V +  +   +
Sbjct: 69  EDRRQALER--EAFEEGATGSGDPEAYVHALELADSVERALAELPLNCRQVFIWQKLEGL 126

Query: 193 SRQEVARRHGVSLRKVDTALRQALGVLR 220
           ++ E+A R G+S   V+  + + L  LR
Sbjct: 127 TQAEIAERMGLSKNMVEKYMIRTLRHLR 154