Pairwise Alignments

Query, 220 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 56.6 bits (135), Expect = 3e-13
 Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 5/162 (3%)

Query: 57  AKSAAPEVDLQAHLAANYQA-LHRRLERQLGCADLASECLHDAWLRLGERQPRETPANPD 115
           + + +P  DL   L  +++  L   L+R + C   A +   D ++RL  R+  +TP  P 
Sbjct: 2   SSAQSPHADLVGALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLDTPREPR 61

Query: 116 AYIYRVACNLAMDGMRERKRWMGLNEDCEDVDVIADL-QPGPDMIAEARSEVAAVDRAMQ 174
           A++  VA  L  D  R             ++ +I +  QP P+M      ++ A+DR + 
Sbjct: 62  AFLAAVAKGLMFDHFRRAALEQAY---LAELALIPEAEQPSPEMQHLILEDLKAIDRLLG 118

Query: 175 GLPGRHRAVLVALRWHEMSRQEVARRHGVSLRKVDTALRQAL 216
            L  + RA  +  R   M   E+A R GVS+ +V   + Q +
Sbjct: 119 KLSSKARAAFLHSRLDGMGHAEIAERLGVSVSRVRQYIAQGM 160