Pairwise Alignments

Query, 220 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 196 a.a., RNA polymerase sigma factor from Brevundimonas sp. GW460-12-10-14-LB2

 Score = 53.9 bits (128), Expect = 2e-12
 Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 8/188 (4%)

Query: 39  IERIELLAEPEPRTPLPKAKSAAPEVDLQAHLAANYQALHRRLERQLGCADLASECLHDA 98
           +  +++LA    R    +  + A    + A+L            R  G +    + L D 
Sbjct: 4   VTALKVLARLAAREDFARLTAPAAHPLIAAYLEQREDLARFCRARLGGASGDVDDVLQDI 63

Query: 99  WLRLGERQPRETPANPDAYIYRVACNLAMDGMRERKR-------WMGLNEDCEDVDVIAD 151
           +L++       +P NP A+++R+  NL MD  R  +R       W  LN +    + + D
Sbjct: 64  YLKVSTLDLDPSPDNPRAFLFRLTSNLLMDRWRSGQRSANRDAQWRQLNHETGAAEDL-D 122

Query: 152 LQPGPDMIAEARSEVAAVDRAMQGLPGRHRAVLVALRWHEMSRQEVARRHGVSLRKVDTA 211
             P  + +   R ++A +  A+  LP + + V    ++  +S  +VA + G+S   V+  
Sbjct: 123 AAPSAEAVVAGREKLARLLAALDTLPAKTQTVFRLHKFDGVSYADVAVQMGISRSSVEKH 182

Query: 212 LRQALGVL 219
           +  AL VL
Sbjct: 183 MMDALRVL 190