Pairwise Alignments

Query, 240 a.a., DNA polymerase III epsilon subunit (EC 2.7.7.7) from Variovorax sp. SCN45

Subject, 252 a.a., DNA polymerase III subunit epsilon from Pseudomonas putida KT2440

 Score =  200 bits (508), Expect = 3e-56
 Identities = 104/238 (43%), Positives = 152/238 (63%), Gaps = 9/238 (3%)

Query: 3   RLIVLDTETTGLSAENGDRVIELGCVELFNRKLTGNDLHIYFNPERESHEDALKVHGLTT 62
           R ++LDTETTG+    G R+IE+GCVE+  R+LTG   H+Y  P+RES E A+ VHG+T 
Sbjct: 8   RFVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPDRESDEGAINVHGITD 67

Query: 63  DFLRDKPKFATLANDIVEYLRDAELIIHNAAFDVGFLNKEFERAGFPPLRTFVAE---VT 119
            FL  KP+F  +A +  ++++ A L+IHNAAFDVGF+N EF   G    R  +++   + 
Sbjct: 68  AFLVGKPRFGDVAEEFFQFIQGATLVIHNAAFDVGFINNEFALLGQQD-RADISQHCTIL 126

Query: 120 DTLAMAKLVYPGKRNSLDALCDRFGVDRSNRTFHGAKLDAQLLADVYINLTRGQDALLI- 178
           DTL +A+  +PG+RNSLDALC R+ +D S R  HGA LD++LLADVY+ +T GQ +L + 
Sbjct: 127 DTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMTGGQTSLSLA 186

Query: 179 ----DVASSEPEVGTAVVAMDLSQFELPVILAAEQELAAHEGVLAQLDKSSGGRTLFR 232
               D        G + +   + +    VI+A+ +EL AH   LA + KS+GG +L++
Sbjct: 187 GNGADTEEDGQGAGGSEIRRIVGRAPGRVIMASAEELEAHAERLAAIAKSAGGPSLWQ 244