Pairwise Alignments

Query, 539 a.a., Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) from Variovorax sp. SCN45

Subject, 533 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  139 bits (350), Expect = 3e-37
 Identities = 138/537 (25%), Positives = 233/537 (43%), Gaps = 58/537 (10%)

Query: 18  ALRAAALALGLTAAASVCAQPAAGAGQTLRIQINSDIRSTDP-----GGNRDDNTDNVLL 72
           AL+   LA GL A       P A A  TL     +     DP     G + D + + V  
Sbjct: 5   ALKPLLLAAGLLAC-----MPLAQAASTLVYCSEASPAGFDPSQYTSGTDFDASAETVFN 59

Query: 73  HVGEGLVALREDTSVGPMLASKVDTSADGLTYTFTLRDGVKFQNG------ATLTADDVV 126
            + +     R  T V P LA+  D S DGLTYTF LRDGVKF             ADDV+
Sbjct: 60  RLTQ---FKRGGTEVEPGLATSWDISQDGLTYTFHLRDGVKFHTTDFFSPTRDFNADDVL 116

Query: 127 WNWQRYLKPATNWRCL-----PEFDGKGM-TKVLSVEAPNPKTVVFKLERASALFLTMMA 180
           + + R L   + +R       P F   G+ T + SV+  +  TV F L    A F+  +A
Sbjct: 117 FTFNRLLDAQSPFRQAYPSESPYFTDMGLNTTIKSVDKLDDHTVRFNLNNVDASFVQNLA 176

Query: 181 RPDCGSSAIVHRSSVGPDGQWKE----PVGTGPYKLKEWKRGQYVELTRFDGYSSRAEPR 236
                  +  + + +   G+ +E    PVGTGP+  K +++   +   R+       +P 
Sbjct: 177 MSFASVQSAEYAAQLLKQGKAEEINQKPVGTGPFVFKRYQKDSQI---RYVANKQYWKPE 233

Query: 237 DGLTGGKKAEVENLRFVVIPDSAAAKAALYSGGIDAFISPSPSDVIEMRKRSDVLVDTTP 296
           D        +++NL F + PD+A+    L +G       P P+D+  M++  ++ V    
Sbjct: 234 D-------VKLDNLVFAITPDAASRLQKLKAGECQVSGYPRPADIEVMKQDPNLHVLQQA 286

Query: 297 VMTMVALLLQTNDPVLKDVRIRRALALALDTPEIARSVTEGLSAVNNSVVPSSSPYYD-A 355
              +  L      P L  +++R+AL +A+D P I ++V +    +  + +P +   YD  
Sbjct: 287 GFNLGFLAYNVTHPPLDQLKVRQALDMAIDKPAIIKAVYQSAGQLAQNALPPAQWSYDPT 346

Query: 356 VQGSGFKRDLTAAKKLLAEAGYR-GQSIRMIANKRYEA----LYSAAVLVQAMASEAGIN 410
           ++ + +  D T AK LL EAG   G ++ + A     A       +A ++Q    + GI 
Sbjct: 347 IKDAPY--DPTKAKALLKEAGVAPGTTVNLWAMTVQRASNPNARMSAQMIQQDWEKVGIK 404

Query: 411 VELEVLDWATQLDRYTKGQYQSMAFVYSARIDPALNY-------EMVSGDKAAQPRKVWD 463
             +   +W   + R   G++ +M + ++       N+         V G   A+    W 
Sbjct: 405 ANIVSYEWGEYIKRAKNGEHDAMIYGWTGDNGDPDNWLGVLYSCAAVKGSNYAK----WC 460

Query: 464 SPYAQTRLTEAMVSRDKARRQALFDEMHKQMLQDVPMIVLFNASDATAMRKNVVGFK 520
           +P     + +A VS D+ +R   + +  K + + VP+  + N++    +RK V  FK
Sbjct: 461 NPAYDKLVQQAKVSNDREQRIKWYQQAQKILKEQVPITPIANSTVFQPLRKEVKDFK 517