Pairwise Alignments

Query, 539 a.a., Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) from Variovorax sp. SCN45

Subject, 521 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  134 bits (338), Expect = 6e-36
 Identities = 138/515 (26%), Positives = 219/515 (42%), Gaps = 50/515 (9%)

Query: 31  AASVCAQPAAGAGQTLRIQINSDIRSTDPGGNRDDNTDNVLLHVGEGLVALREDTSVGPM 90
           AA++ A   + + QTL I     + S DP  N      ++ LH  + ++  R+   + P 
Sbjct: 9   AAALLATGVSASAQTLSIGFADPVSSVDPELNNHAGDRSLALHFWDSIINSRDGGKLEPA 68

Query: 91  LASKVDTSADGLTYTFTLRDGVKFQNGATLTADDVVWNWQRYLKPATNWRCLPEFDGKGM 150
           LAS    + D  T+ F LR  +K+Q+G   +ADD+V+++QR      +   +  + G  +
Sbjct: 69  LASSWK-ALDDKTWEFKLRTDIKWQDGTPFSADDIVFSFQRSRNVPGS---VASYSG-AL 123

Query: 151 TKVLSVEAPNPKTVVFKLERASALFLTMMARPDCGSSAIVHRSSVGPDGQWKEPVGTGPY 210
             V SV A +P T++ K    + +    +A     S  +  +S        +  VGTGPY
Sbjct: 124 RTVESVTAKDPATLIVKTNTPNPMLPLEIASIYIVSKHVGEKSKTEDYNAGRAVVGTGPY 183

Query: 211 KLKEWKRGQYVELTRFDGYSSRAEPRDGLTGGKKAEVENLRFVVIPDSAAAKAALYSGGI 270
           K   +  G      R  GY            G K   E + +  I + AA  AAL +G +
Sbjct: 184 KFVSYVPGDRTVFERNPGYY-----------GPKPLWEKVNYRFINNGAARTAALLAGDV 232

Query: 271 DAFISPSPSDVIEMRKRSDVLVDTTPVMTMVALLLQ-------------------TNDPV 311
           D     + +DV ++RK   V V T P + +  LLLQ                     +P+
Sbjct: 233 DVIDKVAVTDVEKLRKDPKVSVYTYPGLRV--LLLQPTFKAGPNEFITDNAGKPLEKNPL 290

Query: 312 LKDVRIRRALALALDTPEIARSVTEGLSAVNNSVVPSSS-PYYDAVQGSGFKRDLTAAKK 370
           L DVR+R+AL+LA++   I   V +G     N  +P  S  Y   V+   +  +   AKK
Sbjct: 291 L-DVRVRQALSLAINRKAIVDRVLQGTVTEANQWMPKGSFGYNPDVKDIAYNAE--QAKK 347

Query: 371 LLAEAGY-RGQSIRM-IANKRYEALYSAAVLVQAMASEAGINVELEVLDWATQLDRYTKG 428
           LLAEAG+ +G  I + +   RY         V    S  G+  ++EV+ WA    R  K 
Sbjct: 348 LLAEAGFPQGFQIAIHVPGDRYPQAPETVQAVAQFWSRIGVKTKVEVVPWAVYSGRANKN 407

Query: 429 QYQSMAFVYSARIDPA---LNYEMVSGD-KAAQPRKVW---DSPYAQTRLTEAMVSRDKA 481
           +Y      +      A   L   + + D K  +    W    +      L  A V  D  
Sbjct: 408 EYAVSVIAWGNGTGEAGYGLLQTLTTPDAKRGRGSNNWGRYSNESVDKALDAATVEFDAK 467

Query: 482 RRQALFDEMHKQMLQDVPMIVLFNASDATAMRKNV 516
           RR+A+F    K +  DV  I L++  +  A +K +
Sbjct: 468 RREAIFRHAAKLVTDDVGQIPLYHYQNIWAAKKGL 502