Pairwise Alignments

Query, 539 a.a., Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) from Variovorax sp. SCN45

Subject, 544 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  132 bits (332), Expect = 3e-35
 Identities = 122/465 (26%), Positives = 198/465 (42%), Gaps = 46/465 (9%)

Query: 85  TSVGPMLASKVDTSADGLTYTFTLRDGVKFQN------GATLTADDVVWNWQRYLKPATN 138
           T + P LA + D SADGLTYTF LR GVKF           L ADDV+W+  R L P   
Sbjct: 80  TEIQPALAERWDISADGLTYTFHLRQGVKFHTTDYFKPTRDLNADDVLWSLNRQLDPNHP 139

Query: 139 WR-----CLPEFDGKGMTKVL-SVEAPNPKTVVFKLERASALFLTMMARPDCGSSAIVHR 192
           W        P F+  G  ++L SV   +  TVV  L R  A FL  MA       +  + 
Sbjct: 140 WHDKTSVGYPYFESMGFKELLKSVSKADEHTVVITLSRPEAPFLRDMAMGFTSIYSAEYG 199

Query: 193 SSVGPDGQWKE----PVGTGPYKLKEWKRGQYVELTRFDGYSSRAEPRDGLTGGKKAEVE 248
             +   G+  E    P+GTGP+  + + +   V       Y     P D L         
Sbjct: 200 DQLLKSGKTAELNSKPIGTGPFIFQRYNKDAQVRFKPNPDYFRGKPPADALV-------- 251

Query: 249 NLRFVVIPDSAAAKAALYSGGIDAFISPSPSDVIEMRKRSDVLVDTTPVMTMVALLLQTN 308
              F +  DS      L +      + P P DV  +++   + V+    +    + + T 
Sbjct: 252 ---FAIAIDSNVRLQKLRANECQVALYPKPDDVPSIKQDPKLKVEEIEALVTGYIAMNTQ 308

Query: 309 DPVLKDVRIRRALALALD-TPEIARSVTEGLSAVNNSVVPSSSPYYDAVQGSGFKRDLTA 367
              L DVR+R+A+ +A D    + +   +G + V  +  P +   Y+        RDL  
Sbjct: 309 HKYLNDVRVRKAINMAFDRQTHVDQLFGKGNALVGVNPYPPTMIGYN-THNQNPPRDLDK 367

Query: 368 AKKLLAEAGYRGQSIRMIANKRYEALYS-----AAVLVQAMASEAGINVELEVLDWATQL 422
           A+ LL++AG    ++  +  +      +     +A ++QA   + G+ +++ V++WA  L
Sbjct: 368 ARALLSQAGVPEGTVITLFTRNGGGPTNPNPRLSAEMLQADLKQIGLKLDIRVMEWAEML 427

Query: 423 DRYTKGQYQSMAFVYSAR-------IDPALNYEMV-SGDKAAQPRKVWDSPYAQTRLTEA 474
            R   G+   ++  ++         + P L+ + V SG+  A+    W +P  Q  ++ A
Sbjct: 428 RRAKNGEADLVSTGWAGDNGDPDNFLSPLLSCDAVKSGENYAR----WCNPKFQELISRA 483

Query: 475 MVSRDKARRQALFDEMHKQMLQDVPMIVLFNASDATAMRKNVVGF 519
               D   R  L++E  K    + P I + +    TAMR NV G+
Sbjct: 484 REVIDNDERARLYNEALKVYDDEQPWISMAHPKMFTAMRDNVEGY 528