Pairwise Alignments

Query, 314 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 336 a.a., dipeptide ABC transporter - putative membrane subunit from Pseudomonas putida KT2440

 Score =  226 bits (577), Expect = 4e-64
 Identities = 123/335 (36%), Positives = 195/335 (58%), Gaps = 21/335 (6%)

Query: 1   MFAYLLRRIAMTIPTLLLVSIAVFTLMRLIPGDPVLLMLGEG-ADPAQLALMRHQMGLDQ 59
           M +++ RR+ + IPT   +++  F L+RLIPGDPV +M+GE   DP   A    ++GL++
Sbjct: 1   MLSFIARRLGLLIPTFFGITLLTFALIRLIPGDPVEVMMGERRVDPEMHAQAMERLGLNK 60

Query: 60  PLPVQYLVWLRHALTGDLGVSTTNGLAVLPLIWERFQVSAVIVLVAVALASLIAVPAGLV 119
           PLPVQYL ++     GDLG S     +V       F  +  +   A+  A ++ + AG++
Sbjct: 61  PLPVQYLDYVGKLAQGDLGESLRTRESVWREFLTLFPATLELAFAALLFAGVVGLLAGVI 120

Query: 120 AAWRKDKPTDLAIIGAATLMLSVPSFWLGLLLLMFFGQYLGWLPVVGYVPMSEN------ 173
           AA ++    D  ++G +    S+P FW GL+L+MFF   LGW PV G + +  +      
Sbjct: 121 AALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEPKTG 180

Query: 174 --------------FSQGVLYVILPIATLLLVETGVLTRMSRASTIEILRLEYVTHARAK 219
                         F   V+++ILP   L  +   V+ RM+R+S +E+LR +Y+  ARAK
Sbjct: 181 FMLIDTLLSDEEGAFKDAVMHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTARAK 240

Query: 220 GVPESQVLRRHVLPNAFNPTLTMIGLILGHLLSGIAVLETVFTLPGLGRLMIDSIFARDY 279
           G+  ++V+  H L NA  P LT+ GL +G LL+G  + ET+F+ PG+G+ +I++I ARDY
Sbjct: 241 GLSPARVVFVHGLRNALIPVLTVFGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGARDY 300

Query: 280 PVLQGCLLFTACIYVVINLVVDLCYPLFDPRVSVQ 314
           PV+Q  +L  AC+ +++N VVD+ Y L +PR+  Q
Sbjct: 301 PVVQNGILLIACLVILVNFVVDILYGLANPRIRHQ 335