Pairwise Alignments

Query, 1031 a.a., CzcABC family efflux RND transporter, transmembrane protein from Variovorax sp. SCN45

Subject, 1048 a.a., cation efflux system protein from Pseudomonas putida KT2440

 Score =  609 bits (1570), Expect = e-178
 Identities = 367/1037 (35%), Positives = 569/1037 (54%), Gaps = 36/1037 (3%)

Query: 6    ITQFFRRRHLVWAMSIALVL-FGAWSWTQMTVEAYPDLGDVTVQVTTQVNGLASEEIEQQ 64
            + QF   + LV  +++ L+   G  S+ ++ ++A PD+ +V VQ+ T   G +  E EQ+
Sbjct: 5    LIQFAIEQRLVVMLAVVLMAAVGIHSYQKLPIDAVPDITNVQVQINTAAPGYSPLETEQR 64

Query: 65   ITTPLERALSNTPGLASIRSSSTFGLSLITLTFKDGTDDYFARQRVTER--IGQVSLPSG 122
            IT  +E A++  PGL   RS S  GLS +T+ F DGTD +FARQ V ER  + +  LP G
Sbjct: 65   ITFAIETAMAGLPGLKQTRSLSRSGLSQVTVIFDDGTDIFFARQLVNERLQVAREQLPEG 124

Query: 123  AQPGLDPVAGPAGEIYRYTLESDTKNLME---------LSEIQRWIVIPGLRQVAGVVNI 173
             + G+ P++   GEI+ +T+E+    L E         L  IQ WI+ P LR V GV  +
Sbjct: 125  IEAGMGPISTGLGEIFLWTVEAQEGALKEDGTPYTPTDLRVIQDWIIKPQLRNVPGVAEV 184

Query: 174  TNFGGFTKEFQLELDPAALQKYGLALSDVVTAINNNSANAGGGRIARGEQSYVVRGIGLI 233
             + GG  K++ +  +P  L  Y L L+D++ A+  N+AN G G I R  +  ++R  G +
Sbjct: 185  NSIGGHAKQYLIAPEPKRLAAYKLTLNDLIAALERNNANIGAGYIERNGEQLLIRAPGQV 244

Query: 234  TSLDDLGAVVVSQSGGSPVLVRDLGRLQFGHQERGGILGKDRNPDTIEGIVLMLKYENPS 293
             S +D+  +V+S   G+P+ V  + ++  G + R G    +   + + G V ML  EN  
Sbjct: 245  ASAEDIANIVISSVDGTPIRVSHVAQVGLGEELRSGA-ATENGREVVLGTVFMLIGENSR 303

Query: 294  RVLEGVHKKIDELQAQLAPMGVKIVPYIDRDDLVKLTVDKVTHTVLEGMALVCFVLILFL 353
             V + V  K+ E+   L P GV  V   DR +LV+  +  V   ++EG  LV  VL LFL
Sbjct: 304  TVSQAVAAKLVEINRNL-PKGVVAVTVYDRTNLVEKAIATVKKNLIEGAILVIAVLFLFL 362

Query: 354  GSPRSAVVAAVAIPMSLVTVFIVMHFTRMPANLFSLGAIDFGIIVDGAIVVMEAILRR-- 411
            G+ R+A++ A+ IP+S++  F  M   ++ ANL SLGA+DFGIIVDGA+V++E  +RR  
Sbjct: 363  GNIRAALITAMVIPLSMLFTFTGMFSNKVSANLMSLGALDFGIIVDGAVVIVENAIRRLA 422

Query: 412  -REEEPHATLTEGN----ILETVSHVSGPIFFATLIIITAYFPLFAFERAEGKLFKPMAF 466
              ++     LT G     +         P+ +  LII+  Y P+FA    EGK+F PMAF
Sbjct: 423  HAQQRHGRMLTRGERFHEVFAAAREARRPLIYGQLIIMVVYLPIFALTGVEGKMFHPMAF 482

Query: 467  TVGYALVGALLCAITLIPSLAYVALRKPMKPFVNKPLVWLTGA--YRRVLGHLLRVPAIA 524
            TV  AL+GA++ ++T +P  A +AL    K    + LV  T    Y  VL  +L    +A
Sbjct: 483  TVVMALLGAMILSVTFVP--AAIALFVTGKVKEEEGLVMRTARQRYAPVLAWVLGRRKLA 540

Query: 525  YALSIAALAAVAILGATAGREFLPDIDEGALWLQVQLPSGLSLDKASEMTAELRHVLL-E 583
             A + A +    ++ +  G EF+P + EG   LQ     G SL ++ +M   L   ++ +
Sbjct: 541  CAAAAALVLLSGVMASRMGSEFIPSLSEGDFALQALRVPGTSLSQSVDMQQRLEQAIIAQ 600

Query: 584  YPEVSYVVTQLGRNDDGTDPWTPSHVEVPVGLKPYSEW-PAGVNKAAFVRTLNERFSKMP 642
             PEV  V  + G  +  +DP  P+  +  V L+P  +W   G  +   +  +    + +P
Sbjct: 601  VPEVERVFARTGTAEIASDPMPPNISDAYVMLRPREQWVDPGKPRDELIAQVQRAAASVP 660

Query: 643  GFDVGISQPIIDGVNDAVGGAHSPLVLRIYGDDLKESRRIGNEIVDLLHTVRGTASASLF 702
            G +  +SQPI    N+ + G  S + ++++GDD++   R   +I   L  V G +   + 
Sbjct: 661  GSNYELSQPIQLRFNELISGVRSDVAVKLFGDDMEVLNRTAAQIAASLQGVPGASEVKVE 720

Query: 703  QEPPIPQVVIKLDREAAARLGVNANDVASLVQTGMGGAPVITVYSGDRTYNVTVKLPKSA 762
            Q   +P + I +DR+ AAR G+N  DV   +   +GG    T+Y GDR +++ V+L ++ 
Sbjct: 721  QTTGLPVLTIDIDRDKAARHGLNVGDVQDAIAIAVGGRTAGTLYEGDRRFDMVVRLSETL 780

Query: 763  KSGTEAIGSLLLNGAGGAK--------IPLSQVASVKLQTGESTISHELNSRQITVRIDN 814
            ++  + + SLL+     A         IPLSQVA++ LQ G + +S E   R + V  + 
Sbjct: 781  RTDVDGLASLLIPVPASAAERAGQIGFIPLSQVATLNLQLGPNQVSREDGKRVVVVSANV 840

Query: 815  RGRDLASYLVEAQDRIAKDVKFDHAKFRLQWAGQFENQQRAQARLAVSLLIVVSIMAVLL 874
            RGRDL S++ EA+  +   V+     +  +W GQFE  Q A  RL V + + + ++  LL
Sbjct: 841  RGRDLGSFVQEAEQALIDQVQVPPG-YWTRWGGQFEQLQSAAERLQVVVPVALLLVMALL 899

Query: 875  FFQFGKIRHVALILGVVPMATLGGLIAVHVAGETLNVATAVGFIALFGVSIQNGIIMVAN 934
               F  +R   L+   +P A  GG++A+      L+++  VGFIAL GV++ NG++M+A 
Sbjct: 900  LMMFNNLRDGLLVFTGIPFALTGGVLALWARDIPLSISAGVGFIALSGVAVLNGLVMIAF 959

Query: 935  FRRVRGEGLALEASVLEGATERLRPVLMTATVASIGMLPAALATGVGTDVQRGLATVVVG 994
             R +R EG  L A+V EGA  RLRPVLMTA VAS+G +P ALATG G +VQR LATVV+G
Sbjct: 960  IRGLREEGRTLRAAVEEGALTRLRPVLMTALVASLGFIPMALATGTGAEVQRPLATVVIG 1019

Query: 995  GLVVSTLLTLFILPTLF 1011
            G++ ST LTL +LP L+
Sbjct: 1020 GILSSTALTLLVLPALY 1036



 Score = 30.8 bits (68), Expect = 5e-04
 Identities = 61/325 (18%), Positives = 133/325 (40%), Gaps = 28/325 (8%)

Query: 185  LELDPAALQKYGLALSDVVTAINNNSANAGGGRIARGEQSY--VVR-GIGLITSLDDLGA 241
            +++D     ++GL + DV  AI         G +  G++ +  VVR    L T +D L +
Sbjct: 730  IDIDRDKAARHGLNVGDVQDAIAIAVGGRTAGTLYEGDRRFDMVVRLSETLRTDVDGLAS 789

Query: 242  VVVSQSGGSPVLVRDLGRLQFGHQERGGILGKDRNPDTI---EGIVLMLKYENP------ 292
            +++     +       G++ F    +   L     P+ +   +G  +++   N       
Sbjct: 790  LLIPVPASA---AERAGQIGFIPLSQVATLNLQLGPNQVSREDGKRVVVVSANVRGRDLG 846

Query: 293  SRVLEGVHKKIDELQAQLAPMGVKIVPYIDRDDLVKLTVDKVTHTVLEGMALVCFVLILF 352
            S V E     ID++Q    P G     +  + + ++   +++   V   + LV  +L++ 
Sbjct: 847  SFVQEAEQALIDQVQV---PPGYW-TRWGGQFEQLQSAAERLQVVVPVALLLVMALLLMM 902

Query: 353  LGSPRSAVVAAVAIPMSLVTVFIVMHFTRMPANLFS-LGAIDF-GIIVDGAIVVMEAILR 410
              + R  ++    IP +L    + +    +P ++ + +G I   G+ V   +V++  I  
Sbjct: 903  FNNLRDGLLVFTGIPFALTGGVLALWARDIPLSISAGVGFIALSGVAVLNGLVMIAFIRG 962

Query: 411  RREEEP--HATLTEGNILETVSHVSGPIFFATLIIITAYFPLFAFERAEGKLFKPMAFTV 468
             REE     A + EG +         P+    L+    + P+        ++ +P+A  V
Sbjct: 963  LREEGRTLRAAVEEGALTRL-----RPVLMTALVASLGFIPMALATGTGAEVQRPLATVV 1017

Query: 469  GYALVGALLCAITLIPSLAYVALRK 493
               ++ +    + ++P+L   A R+
Sbjct: 1018 IGGILSSTALTLLVLPALYQWAYRR 1042