Pairwise Alignments

Query, 1031 a.a., CzcABC family efflux RND transporter, transmembrane protein from Variovorax sp. SCN45

Subject, 1048 a.a., AcrB/AcrD/AcrF family protein from Agrobacterium fabrum C58

 Score =  363 bits (933), Expect = e-104
 Identities = 279/1041 (26%), Positives = 490/1041 (47%), Gaps = 61/1041 (5%)

Query: 14   HLVWA--MSIALVLFGAWSWTQMTVEAYPDLGDVTVQVTTQVNGLASEEIEQQITTPLER 71
            H V+A  M +AL++ GA+S  ++ ++ YP++    V V T   G   E +E ++T P+E 
Sbjct: 10   HPVFATMMMVALLVMGAFSLQRLGLDQYPNVDVPVVVVVTSYPGATPETVEMEVTRPVED 69

Query: 72   ALSNTPGLASIRSSSTFGLSLITLTFKDGTDDYFARQRVTERIGQV--SLPSGAQPGLDP 129
            AL+   GL  + S+S  G S++   FK       A Q V ++I  +  + P   +  +  
Sbjct: 70   ALNAIGGLDEVTSTSYEGRSVVVAKFKLEVQSSAAAQEVRDKIAAIEANFPEDTKKPVIS 129

Query: 130  VAGPAGE-IYRYTLESDTKNLMELSEIQRWIVIPGLRQVAGVVNITNFGGFTKEFQLELD 188
               PA E I    + S + ++  L+ +    V+  L  VAG+   T  GG  ++  + +D
Sbjct: 130  RFDPAAEPILSLAISSTSLDVPALATLAEQKVVRQLTTVAGIGQATLVGGRKRQIDVTID 189

Query: 189  PAALQKYGLALSDVVTAINNNSANAGGGRIARGEQSYVVRGIGLITSLDDLGAVVVSQSG 248
               ++  G+ +++VVTA+   ++N+  G +        ++    I   + L  +VV++ G
Sbjct: 190  ETRMRALGIGVNEVVTALRAGNSNSPAGSVVDPVSERTIQIQSRIEEPEALLDMVVARRG 249

Query: 249  GSPVLVRDLGRLQFGHQERGGILGKDR---NPDTIEGI-VLMLKYENPSRVLEGVHKKID 304
            G  +L+RD+  L  G  +      ++R   N  T   I ++ ++  N  +V+  V K++D
Sbjct: 250  GVAILLRDVATLSEGAAD-----AENRAIYNGQTALAIDIVKVQDANTVQVVSDVRKRLD 304

Query: 305  ELQAQLAPMGVKIVPYIDRDDLVKLTVDKVTHTVLEGMALVCFVLILFLGSPRSAVVAAV 364
             L A+L+P  +++    D    ++ +V +V  T++EG AL   ++ LFL S RS V+  +
Sbjct: 305  ALNAELSPQNIQLRIVTDSSIPIQESVTQVQTTLIEGAALAVAIVFLFLNSWRSTVITGL 364

Query: 365  AIPMSLVTVFIVMHFTRMPANLFSLGAI--DFGIIVDGAIVVMEAILRRREEEPHATLTE 422
             +P++++    V+ F     N  SL A+    GI+VD AIVV E I R      H  + +
Sbjct: 365  TLPIAIIGTLTVVDFLGFTLNTLSLLALTLSIGILVDDAIVVRENITR------HLHMGK 418

Query: 423  GNI---LETVSHVSGPIFFATLIIITAYFPLFAFERAEGKLFKPMAFTVGYALVGALLCA 479
             ++   L+    +   +   T  I+  + P+   +   G+ F     TV  A++ +L  A
Sbjct: 419  SHLRAALDGTGEIGLAVIATTATIVAVFLPVAFMDGIVGRFFYQFGVTVSAAVLISLFVA 478

Query: 480  ITLIPSLAYV---------ALRKPMKPFVNK---PLVWLTGAYRRVLGHLLRVPAIAYAL 527
             TL P L+ V         A R P+   + +      W+ G YR  +   LR   +   +
Sbjct: 479  FTLDPMLSSVWYDPDAQADAKRGPIGRLIARFDHGFEWMAGQYRHAIDWTLRHRLVTLLV 538

Query: 528  SIAALAAVAILGATAGREFLPDIDEGALWLQVQLPSGLSLDKASEMTAELRHVLLEYPEV 587
            +         +    G EF+PD DEG   + +  P G SLD  +    +++  L E+PEV
Sbjct: 539  TAGIFIGSLFMVPLVGTEFVPDADEGRFQINLTAPVGSSLDYTTAKLQQVKKALREFPEV 598

Query: 588  SYVVTQLGRNDDGTDPWTPSHVEVPVGLKPYSEWPAGVNKAAFVRTLNERFSKMPGFDVG 647
              + + +  N  G          + VGL P S         +    + +R S +PG ++ 
Sbjct: 599  EMLYSTI--NTGGAAG--KHRAAILVGLVPLSAREQ--TPLSLAEPVRKRLSAIPGIEIN 652

Query: 648  ISQPIIDGVNDAVGGAHSPLVLRIYGDDLKESRRIGNEIVDLLHTVRGTASASLFQEPPI 707
            I Q       + +GG  SP+ L I GDD     +I N +V+ +  + G    +   +   
Sbjct: 653  ILQ-------NGLGGGESPVQLSILGDDRAVLEKIANGLVEDMKKIPGLVEVTSSTKDVT 705

Query: 708  PQVVIKLDREAAARLGVNANDVASLVQTGMGGAPVIT-VYSGDRTYNVTVKLPKSAKSGT 766
              + ++L   AA+ LG+   D+A+ +   +GG  V     +   +Y++ V+LP   +S  
Sbjct: 706  SILSVRLKPAAASDLGIARADLAAALSALIGGEDVSKWTDAHGNSYDIVVRLPVERRSDA 765

Query: 767  EAIGSLLLN----GAGGAK--IPLSQVASVKLQTGESTISHELNSRQITVRIDNRGRDLA 820
              +G L++     GA GA   + L QVA +      + I    N R+I V  +  GR L 
Sbjct: 766  ARLGELMITTGRTGANGAPLMVRLDQVADIGTVAAPAEIRRFDNRREILVSANITGRTLG 825

Query: 821  SYLVEAQDRIA-KDVKFDHAKFRLQWAGQFENQQRAQARLAVSLLIVVSIMAVLLFFQFG 879
                  Q   A +D+    A +R+++ G+ E  Q     +  +L + +  + ++L  QFG
Sbjct: 826  DVTETLQGLTASRDLP---AGYRIRFGGEAETMQETVGHMGTALSMAIIFIYIVLASQFG 882

Query: 880  KIRHVALILGVVPMATLGGLIAVHVAGETLNVATAVGFIALFGVSIQNGIIMVANFRRVR 939
                   I+  +P++ +G L+ + VAG T+N+ + +GFI L G+  +NGI++V    R R
Sbjct: 883  SFLQPLAIMVSLPLSLIGVLLGLMVAGSTINMFSLIGFIMLMGLVTKNGILLVDFANRER 942

Query: 940  GEGLALEASVLEGATERLRPVLMTATVASIGMLPAALATGVGTDVQRGLATVVVGGLVVS 999
              GL L  ++      R RP++MT      GM+P  LA G G   +  +A  VVGGL+ S
Sbjct: 943  RRGLTLNEALANAGVIRFRPIIMTTLAMIFGMIPLGLAVGGGGAQRAPMAHAVVGGLISS 1002

Query: 1000 TLLTLFILPTLFFALERLFER 1020
            TLLTL ++P +   ++ +  R
Sbjct: 1003 TLLTLIVVPVILSYIDSITRR 1023