Pairwise Alignments

Query, 300 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 316 a.a., Branched-chain amino acid ABC-type transport system, permease components from Enterobacter asburiae PDN3

 Score = 72.8 bits (177), Expect = 1e-17
 Identities = 79/273 (28%), Positives = 121/273 (44%), Gaps = 27/273 (9%)

Query: 3   DTLVSILISGTPL--IYVTLAGVLAQRAGIW---NLGLEGLMIIGSCALIVGI-VQTGSF 56
           DTL+  LI+G  L  IY  +A       GI    N     ++++G+   +  I     +F
Sbjct: 2   DTLIQQLINGVMLGSIYALIALGYTMVYGILRIINFAHGDILMVGALTTLSAINALNATF 61

Query: 57  AQAML-----IAVGLCVAASALLWWVVERL---------KANPIIAGLGLTGLGLGGTSL 102
               L     +A+ + +A  ALL   VER          +  P+I+G+G++ L L   ++
Sbjct: 62  PHMPLLLQLGVALVIAMAVCALLAMAVERFAYRRLRNAPRLAPLISGIGVSVL-LQTVAM 120

Query: 103 AI---QALYDSEATVTAPFGIPKLNSLFGADLGPFGGLSVFVLLMPVAVWLVWLLLERTR 159
            I     L   +     P  +   + L    +    G+    L + V   L WLL+E TR
Sbjct: 121 IIWTRNPLMFPQILPMEPIAVTSGSELHPPAIVTVTGIVTVALALAVMTGL-WLLVEYTR 179

Query: 160 LGLQMSASGEHPFAARSVGVNPSRMRLLALALGGVLCAIGGAELAGGSLQIFSQNMTAGR 219
           LG  M A  E+P  A  +GVNP+ +  L  A+GGV  A+ G  +A  +    S +M    
Sbjct: 180 LGRGMRAVAENPRVATLMGVNPNAIITLTFAIGGVFAALAGVMMA-SNYGNASFSMGFLP 238

Query: 220 GFMAF-AAVIFGAGGALGATAAALFFAVVSALG 251
           G  AF AAV+ G G   GA    +   ++ ALG
Sbjct: 239 GIKAFTAAVLGGIGNIRGAMIGGILLGIIEALG 271