Pairwise Alignments

Query, 648 a.a., Retron-type RNA-directed DNA polymerase (EC 2.7.7.49) from Variovorax sp. SCN45

Subject, 473 a.a., Group II intron-encoding maturase from Pseudomonas putida KT2440

 Score = 48.5 bits (114), Expect = 7e-10
 Identities = 74/297 (24%), Positives = 115/297 (38%), Gaps = 58/297 (19%)

Query: 192 IAKKSGGERHISAPMPRMKRAQYWVLDNILAKMPVHDAV-----HGFLPGRSI---LTNA 243
           I K  GG R +  P    +  Q  +   +    P+ D +     +GF PGRS    +  A
Sbjct: 119 IPKPQGGTRQLGIPSVVDRLIQQALQQQLT---PIFDPLFSDYSYGFRPGRSTHQAIEMA 175

Query: 244 APHV--GQDVVINLDLKDFFPSIGMRRVRGVFRQLGYSSQVASLLALVCTEAPTDEVQLD 301
             HV  G    + LDL+ FF  +    +     +      V  L+               
Sbjct: 176 RAHVTAGHRWCVELDLEKFFDRVNHDILMACIERRIKDKCVLRLI--------------- 220

Query: 302 GRRYF---------VARGERVLPQGAPTSPMLTNLLCRRLDARLAASAAKLGFRYTRYAD 352
            RRY          V+  +   PQG P SP+L+N+L   LD  L     + G R+ RYAD
Sbjct: 221 -RRYLEAGIMSGGVVSPRQEGTPQGGPLSPLLSNILLDELDREL----ERRGHRFVRYAD 275

Query: 353 DLSFSAGPAHSRDTAKLLWRVKQIVASE-GLTVHPDKQQVMRRHR--------QQHVTGI 403
           D +        R   ++L  V++ +     LTV+  K QV R  +          H    
Sbjct: 276 DANIYV--RSPRAGERVLVSVERFLRERLKLTVNRKKSQVARAWKCDYLGYGMSWHQQPR 333

Query: 404 VVNDKLSLDRDTMRRFRAVLHQAESRGPQGLRWNGNSDVIGALRGYANFIAMTDAAR 460
           +   ++SLDR    R R +L    +R    +    N      LRG+A++  ++ + R
Sbjct: 334 LRVARMSLDR-LRDRLRMLLRSVRARKMATVIERINP----VLRGWASYFKLSQSKR 385