Pairwise Alignments

Query, 648 a.a., Retron-type RNA-directed DNA polymerase (EC 2.7.7.49) from Variovorax sp. SCN45

Subject, 304 a.a., hypothetical protein from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  101 bits (251), Expect = 5e-26
 Identities = 83/283 (29%), Positives = 134/283 (47%), Gaps = 33/283 (11%)

Query: 185 SHYQRFTIAKKSGGERHISAPMPRMKRAQYWVLDNILAKMPVHDAVHGFLPG--RSILTN 242
           ++Y+ + I KK+ G R I  P  ++K  QY ++D IL K+ VH+A  G++ G    I  N
Sbjct: 27  NNYRIYKIPKKTTGTRTIYHPSKQVKAVQYILIDLILKKLQVHNAAVGYIKGVKAPIKRN 86

Query: 243 AAPHVGQDVVINLDLKDFFPSIGMRRVRGVFRQLGYSSQVASLLALVCTEAPTDEVQLDG 302
           A  H      I +D K+FF SI    ++ V                   E  + E+ LD 
Sbjct: 87  AEQHAKFPYSIRIDFKNFFSSISFSDLKKVL------------------ENSSLELSLDD 128

Query: 303 RRYF-VARGERVLPQGAPTSPMLTNLLCRRLDARLAASAAKLGFR--YTRYADDLSFSAG 359
            +   +   +  LP GAP+SP+++N++   LD  LA  A K+     YTRYADD+ FS  
Sbjct: 129 YKVLELVLFKNGLPIGAPSSPLISNIVMFELDELLAREALKVDSNSLYTRYADDIVFSTS 188

Query: 360 PAHS-RDTAKLLWRVKQIVASEGLTVHPDKQQVMRRHRQQHVTGIVV--NDKLSLDRDTM 416
             +  +D  K L  V        LT++  K + M R  ++ VTG+++    K+S+ R+  
Sbjct: 189 KKNGCKDFLKKLKSVLINYNHPKLTINSSKTKFMSRKSKRMVTGLIITPQGKVSIGRENK 248

Query: 417 RRFRAVLHQAESRGPQGLRWNGNSDVIGALRGYANFIAMTDAA 459
              + +L+Q   +         N + +  L GY +FI   + A
Sbjct: 249 EFIKMLLYQYNKK-------LLNPEQVSYLTGYLSFIIDVEPA 284