Pairwise Alignments

Query, 504 a.a., RND efflux system, outer membrane lipoprotein, NodT family from Variovorax sp. SCN45

Subject, 511 a.a., Antibiotic efflux pump outer membrane protein ArpC from Xanthobacter sp. DMC5

 Score =  396 bits (1018), Expect = e-115
 Identities = 222/475 (46%), Positives = 299/475 (62%), Gaps = 5/475 (1%)

Query: 11  VAAGIALLLGGCAAGPDYVRPPLNLPTQY----TSAPASSTEAEGVPLPRFSPDLDVPAQ 66
           V A   LL+ GC  GPD+  P     + Y    T  P +S +  G     F    D+P +
Sbjct: 18  VVAASLLLMNGCMVGPDFEAPDAPRVSGYLPEGTPRPTTSADVHGGRSQAFLRGRDLPGE 77

Query: 67  WWQAFRSEPLNALVVQSLAGNPTIEAADAALRVAQENEAADRAAFWPTVALGYSPTRQRV 126
           WW+ FR++ ++A V +++  +P I AA AALR A+EN  A   + +P V+   S TRQ V
Sbjct: 78  WWRVFRNKQIDAFVAEAIRNHPDIAAAQAALRAARENALAGEGSLFPQVSANGSATRQ-V 136

Query: 127 AGAVASPVSSNANLYTLHTAQVTVSYTPDVFGATRRQVEGAQAQTEQQRFQTLAAKLSLS 186
               +   S N N Y L+ A V+VSY  DV+G TRR VE  +AQ + QRFQ  A  LSL+
Sbjct: 137 TSLASQGESGNTNPYNLYNASVSVSYVLDVWGGTRRNVEALEAQADYQRFQLEATYLSLT 196

Query: 187 SNVVAAAITEASLRAQQRATQAIIADQKEVLQAYRKQLGLGQVAVADVDAQEASLAATEA 246
           +NVV AAIT+ASLRAQ  AT  II  ++E L+  ++Q  LG VA +DV +Q+++LA T+A
Sbjct: 197 ANVVTAAITDASLRAQIEATNDIIKSEQEQLKLVQRQFELGAVAQSDVLSQQSNLAQTQA 256

Query: 247 TLPPLDKQLAQQRNLLATLAGRYPSEGVAAHFELDALQLPGELPRTLPSTLVEHRPDVRA 306
           TLPPL KQLAQQRN L    GR PS+    H  L +L LP +LP ++PS LV  RPD+ A
Sbjct: 257 TLPPLQKQLAQQRNQLMAYLGRLPSQDRGEHVTLASLTLPRDLPVSVPSALVRQRPDIGA 316

Query: 307 AEAQLQAASAAIGVAVAARLPNVTLGASYGSSAYTLSQLFKSSSLFWSLAGNVTQTVFDG 366
           AEA L  A+A +GV VA  LP V L  SYG +  T   LF   +  WS+AG+V QTVFDG
Sbjct: 317 AEASLHKATATVGVNVANMLPQVQLTGSYGRAGLTPDSLFSPGTAAWSIAGSVAQTVFDG 376

Query: 367 GALKHREAAARASFDQAGAQYRATVLSAFQDVANALEAIDADTRALQAAVKAERTASQSL 426
           G L H + +A AS +QA AQY++TV++AF+DVA++L AI+AD   L+A +  E+ A +S+
Sbjct: 377 GTLYHDKESAVASNEQALAQYKSTVITAFRDVADSLRAIEADASTLKAQLAYEKAAQESV 436

Query: 427 ARTRTQVRLGDASPLALRIAQQAEQQALLNLVQARALRLTDAAALFQALGGGWWN 481
             +RTQ   G  +  ++  A+Q  QQA++  V+A+A R TD AALFQALGGGWWN
Sbjct: 437 KISRTQYLAGAVTYPSVLTAEQNFQQAVVARVKAQAARFTDTAALFQALGGGWWN 491