Pairwise Alignments

Query, 142 a.a., 3'-to-5' exoribonuclease RNase R from Variovorax sp. SCN45

Subject, 576 a.a., 30S ribosomal protein S1 from Pseudomonas putida KT2440

 Score = 40.8 bits (94), Expect = 3e-08
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 11/77 (14%)

Query: 38  GGEFDGVISGVTSFGLFIELDDSKVNGLVHVTQLPHDYYHFDPIRKTLSGERTGREYRLG 97
           G +  G I  +T FG+FI LD   ++GLVH++ +  +           +GE   R ++ G
Sbjct: 382 GDKITGTIKSITDFGIFIGLDGG-IDGLVHLSDISWNE----------TGEEAVRRFKKG 430

Query: 98  DRVRIVVLKASVEDRKI 114
           D +  V+L    E  +I
Sbjct: 431 DELETVILSVDPERERI 447



 Score = 29.3 bits (64), Expect = 1e-04
 Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 4/53 (7%)

Query: 19  EAEREVDERYRAAWMEQHVGGEFDGVISGVTSFGLFIELDDSKVNGLVHVTQL 71
           EAE   +       +++  G +  G++  +T +G F++L    ++GL+H+T +
Sbjct: 193 EAENSAEREALLETLQE--GQQVKGIVKNLTDYGAFVDL--GGIDGLLHITDM 241